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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
63.8
nTPM
Monaco:
90.6
nTPM
Schmiedel:
34.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
63.8
HPA sample
nTPM
gdT-cell nTPM: 59.0
Samples: 6
Max nTPM: 69.3
Min nTPM: 51.5
P10809_1007
55.2
P10809_1022
62.2
P10809_1041
69.3
P10809_1060
51.5
P10809_1077
52.4
P10809_1098
63.6
MAIT T-cell nTPM: 63.9
Samples: 6
Max nTPM: 85.3
Min nTPM: 40.5
P10809_1006
60.9
P10809_1024
60.5
P10809_1043
70.6
P10809_1062
65.4
P10809_1083
85.3
P10809_1097
40.5
Memory CD4 T-cell nTPM: 39.3
Samples: 6
Max nTPM: 51.6
Min nTPM: 33.1
P10809_1014
34.0
P10809_1026
51.6
P10809_1045
36.3
P10809_1064
33.1
P10809_1086
43.9
P10809_1113
36.9
Memory CD8 T-cell nTPM: 56.6
Samples: 5
Max nTPM: 63.7
Min nTPM: 50.5
P10809_1012
50.5
P10809_1027
63.7
P10809_1046
62.9
P10809_1065
51.0
P10809_1111
55.0
Naive CD4 T-cell nTPM: 31.8
Samples: 6
Max nTPM: 36.8
Min nTPM: 24.1
P10809_1015
27.2
P10809_1030
34.5
P10809_1049
24.1
P10809_1068
34.8
P10809_1085
36.8
P10809_1112
33.2
Naive CD8 T-cell nTPM: 47.5
Samples: 6
Max nTPM: 55.7
Min nTPM: 41.4
P10809_1016
41.4
P10809_1031
55.7
P10809_1050
46.0
P10809_1069
44.6
P10809_1087
54.6
P10809_1110
42.5
T-reg nTPM: 46.0
Samples: 6
Max nTPM: 65.1
Min nTPM: 30.2
P10809_1018
44.5
P10809_1037
30.2
P10809_1056
51.5
P10809_1075
46.0
P10809_1094
65.1
P10809_1106
38.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
90.6
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 70.1
Samples: 4
Max nTPM: 84.6
Min nTPM: 56.7
RHH5202_R3573
62.3
RHH5230_R3602
76.6
RHH5259_R3631
56.7
RHH5288_R3660
84.6
Effector memory CD8 T-cell nTPM: 84.4
Samples: 4
Max nTPM: 103.9
Min nTPM: 60.7
RHH5203_R3574
97.1
RHH5231_R3603
103.9
RHH5260_R3632
75.7
RHH5289_R3661
60.7
MAIT T-cell nTPM: 86.8
Samples: 4
Max nTPM: 106.6
Min nTPM: 53.7
RHH5233_R3605
88.2
RHH5205_R3576
53.7
RHH5262_R3634
106.6
RHH5297_R3663
98.6
Memory CD4 T-cell TFH nTPM: 52.9
Samples: 4
Max nTPM: 82.9
Min nTPM: 27.1
RHH5300_R3666
54.9
RHH5236_R3608
82.9
RHH5265_R3637
46.8
RHH5208_R3579
27.1
Memory CD4 T-cell Th1 nTPM: 50.0
Samples: 4
Max nTPM: 52.8
Min nTPM: 48.1
RHH5210_R3581
49.0
RHH5302_R3668
49.9
RHH5238_R3610
48.1
RHH5267_R3639
52.8
Memory CD4 T-cell Th1/Th17 nTPM: 43.6
Samples: 4
Max nTPM: 51.6
Min nTPM: 26.5
RHH5303_R3669
46.9
RHH5211_R3582
49.3
RHH5239_R3611
26.5
RHH5268_R3640
51.6
Memory CD4 T-cell Th17 nTPM: 51.7
Samples: 4
Max nTPM: 70.2
Min nTPM: 36.5
RHH5304_R3670
40.2
RHH5212_R3583
59.8
RHH5240_R3612
36.5
RHH5269_R3641
70.2
Memory CD4 T-cell Th2 nTPM: 63.7
Samples: 4
Max nTPM: 74.1
Min nTPM: 57.0
RHH5305_R3671
74.1
RHH5213_R3584
57.0
RHH5241_R3613
62.0
RHH5270_R3642
61.8
Naive CD4 T-cell nTPM: 41.8
Samples: 4
Max nTPM: 50.0
Min nTPM: 30.9
RHH5306_R3672
50.0
RHH5214_R3585
41.3
RHH5242_R3614
30.9
RHH5271_R3643
44.8
Naive CD8 T-cell nTPM: 50.7
Samples: 4
Max nTPM: 73.4
Min nTPM: 30.6
RHH5201_R3572
39.3
RHH5229_R3601
30.6
RHH5258_R3630
73.4
RHH5287_R3659
59.3
Non-Vd2 gdTCR nTPM: 63.5
Samples: 4
Max nTPM: 85.6
Min nTPM: 52.2
RHH5235_R3607
55.4
RHH5264_R3636
85.6
RHH5207_R3578
60.8
RHH5299_R3665
52.2
T-reg nTPM: 48.3
Samples: 4
Max nTPM: 55.2
Min nTPM: 36.7
RHH5301_R3667
55.2
RHH5237_R3609
54.1
RHH5266_R3638
47.3
RHH5209_R3580
36.7
Terminal effector memory CD4 T-cell nTPM: 60.4
Samples: 2
Max nTPM: 62.8
Min nTPM: 57.9
RHH5243_R3615
57.9
RHH5272_R3644
62.8
Terminal effector memory CD8 T-cell nTPM: 56.3
Samples: 4
Max nTPM: 69.1
Min nTPM: 45.5
RHH5232_R3604
45.5
RHH5204_R3575
69.1
RHH5261_R3633
53.4
RHH5296_R3662
57.0
Vd2 gdTCR nTPM: 90.6
Samples: 4
Max nTPM: 101.6
Min nTPM: 79.1
RHH5234_R3606
98.9
RHH5206_R3577
101.6
RHH5263_R3635
82.7
RHH5298_R3664
79.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
