HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		123.849
RNA expressioni
Consensus:57.3 nTPM
HPA Brain:81.3 nTPM
GTEx:57.3 nTPM
FANTOM5:118.5 Scaled Tags Per Million
Pig:106.0 nTPM
Mouse:110.9 nTPM
Allen mouse:14.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017960
Glial cells High
Neuronal cells Low



HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA017960
Hippocampal formation mean intensity 123.849
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 51.479
Molecular layer of the dentate gyrus 84.072
Granular dentate gyrus 76.388
CA1 - oriens layer 47.815
CA1 - pyramidal layer 79.257
CA1 - radiatum layer 70.044
CA2 - oriens layer 72.414
CA2 - pyramidal layer 77.820
CA2 - radiatum layer 84.481
CA3 - oriens layer 92.195
CA3 - pyramidal layer 92.520
CA3 - radiatum layer 123.849
Stratum lucidum 69.438
Lacunosum moleculare 79.444
Subiculum 68.084

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 81.3
Sample id Sample description nTPM
Hippocampus
nTPM: 80.2
1855 Male, age 76, left hemisphere 95.3
2621 Female, age 67, right hemisphere 93.4
1898 Male, age 80, left hemisphere 89.5
1911 Female, age 85, right hemisphere 72.2
2148 Female, age 91, left hemisphere 68.2
2529 Female, age 94, left hemisphere 62.7
Dentate gyrus
nTPM: 80.2
2530 Female, age 94, left hemisphere 105.3
2010 Male, age 76, both hemispheres 96.9
2246 Female, age 85, both hemispheres 77.1
2531 Female, age 67, both hemispheres 69.8
2528 Male, age 74, both hemispheres 68.2
1927 Female, age 91, both hemispheres 63.8
Entorhinal gyrus
nTPM: 76.8
2613 Female, age 94, left hemisphere 95.3
2764 Male, age 80, right hemisphere 85.2
1938 Female, age 85, left hemisphere 78.9
1787 Male, age 76, left hemisphere 76.4
2686 Male, age 75, right hemisphere 63.3
2117 Female, age 91, right hemisphere 61.6
Hippocampus, CA1
nTPM: 80.3
2749 Male, age 80, left hemisphere 115.7
1873 Female, age 85, both hemispheres 87.1
2527 Male, age 74, both hemispheres 76.5
2082 Female, age 91, right hemisphere 63.8
2045 Male, age 76, both hemispheres 58.2
Hippocampus, CA2
nTPM: 81.3
1963 Male, age 80, left hemisphere 88.3
2249 Male, age 74, both hemispheres 86.1
1940 Female, age 85, left hemisphere 85.4
1892 Male, age 76, both hemispheres 84.1
2437 Female, age 94, left hemisphere 82.2
2113 Female, age 91, right hemisphere 61.6
Hippocampus, CA3
nTPM: 74.6
2137 Male, age 80, left hemisphere 90.3
2861 Female, age 67, both hemispheres 80.4
2620 Female, age 94, left hemisphere 73.1
2436 Male, age 74, both hemispheres 69.1
1867 Male, age 76, both hemispheres 68.6
1891 Female, age 85, both hemispheres 65.8
Parahippocampal cortex
nTPM: 76.6
2532 Female, age 72, left hemisphere 96.4
1850 Male, age 80, both hemispheres 83.0
2622 Female, age 67, right hemisphere 79.0
2693 Female, age 94, both hemispheres 78.8
2245 Female, age 91, both hemispheres 76.6
1933 Female, age 85, both hemispheres 74.1
2018 Male, age 76, both hemispheres 72.3
2692 Male, age 74, both hemispheres 72.2
2250 Female, age 67, right hemisphere 67.9
1990 Female, age 91, right hemisphere 65.7
Perirhinal gyrus
nTPM: 76.9
1794 Male, age 80, right hemisphere 83.6
1841 Female, age 85, right hemisphere 79.7
2521 Female, age 94, right hemisphere 75.2
1847 Female, age 91, left hemisphere 75.0
2848 Male, age 76, right hemisphere 71.1
Subiculum
nTPM: 73.9
2438 Female, age 94, left hemisphere 87.7
1901 Male, age 80, both hemispheres 82.8
2042 Male, age 76, both hemispheres 82.7
1977 Female, age 85, both hemispheres 67.5
2619 Male, age 74, both hemispheres 66.2
2729 Female, age 91, right hemisphere 56.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 57.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 57.3
Samples: 197

Max nTPM: 122.8
Min nTPM: 14.7
Std nTPM: 16.8
Median nTPM: 55.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 122.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 106.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 97.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 95.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 94.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 91.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 89.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 88.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 86.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 85.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 84.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 118.5
FF:10169-103B7 60 years, female 156.8
FF:10153-102I9 76 years, female 80.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 106.0
Pig sample Sample description nTPM
Subiculum
nTPM: 66.4
Samples: 4

Max nTPM: 74.6
Min nTPM: 57.9
Sample A Female 74.6
Sample B Female 60.3
Sample C Male 72.6
Sample D Male 57.9
Dorsal hippocampus
nTPM: 106.0
Samples: 4

Max nTPM: 128.6
Min nTPM: 81.7
Sample A Female 128.6
Sample B Female 114.2
Sample C Male 99.5
Sample D Male 81.7
Entorhinal cortex
nTPM: 80.0
Samples: 4

Max nTPM: 87.3
Min nTPM: 73.0
Sample A Female 87.3
Sample B Female 82.3
Sample C Male 73.0
Sample D Male 77.3
Ventral hippocampus
nTPM: 100.0
Samples: 4

Max nTPM: 118.6
Min nTPM: 64.1
Sample A Female 101.2
Sample B Female 64.1
Sample C Male 115.9
Sample D Male 118.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 110.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 83.5
Samples: 4

Max nTPM: 93.3
Min nTPM: 75.5
Sample A Male 83.3
Sample B Male 75.5
Sample C Female 81.8
Sample D Female 93.3
Hippocampal formation
nTPM: 110.9
Samples: 4

Max nTPM: 124.5
Min nTPM: 90.3
Sample A Male 90.3
Sample B Male 119.9
Sample C Female 124.5
Sample D Female 108.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.8
68845275 Antisense, RP_050224_01_E01, Mouse strain C57BL/6J (56 days, male) 17.1
72077454 Antisense, RP_051017_03_A08, Mouse strain C57BL/6J (56 days, male) 12.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org