MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.0 nTPM
HPA Brain:112.0 nTPM
GTEx:51.0 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:130.4 nTPM
Mouse:44.6 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.5
2019 Male, age 18, unknown 137.1
2586 Male, age 75, left hemisphere 127.2
1833 Male, age 53, unknown 96.1
1830 Male, age 51, unknown 94.0
2666 Male, age 74, left hemisphere 92.4
1870 Female, age 42, unknown 91.8
2411 Female, age 72, unknown 90.8
2828 Female, age 72, unknown 83.7
2219 Male, age 76, both hemispheres 76.8
1827 Male, age 72, unknown 75.4
Dorsal raphe nucleus
nTPM: 77.7
2750 Male, age 76, both hemispheres 91.3
1828 Male, age 53, unknown 87.0
2016 Female, age 72, unknown 77.1
2047 Male, age 72, unknown 68.6
2298 Female, age 72, unknown 64.7
Inferior colliculus
nTPM: 73.7
1890 Male, age 53, unknown 85.4
1848 Female, age 42, unknown 75.5
2849 Male, age 72, unknown 71.1
2097 Female, age 72, unknown 62.9
Median raphe nucleus
nTPM: 69.4
2220 Male, age 76, midline 69.4
Periaquaductal grey, anterior
nTPM: 85.2
2502 Female, age 75, unknown 97.7
1795 Male, age 51, unknown 84.4
1947 Male, age 18, unknown 73.6
Periaquaductal grey, dorsal
nTPM: 72.7
2850 Male, age 76, both hemispheres 87.5
1831 Male, age 72, unknown 72.3
2464 Female, age 72, unknown 70.0
1840 Male, age 53, unknown 60.9
Periaquaductal grey, lateral
nTPM: 82.9
2272 Male, age 74, both hemispheres 94.8
2140 Male, age 76, both hemispheres 84.7
2053 Male, age 18, unknown 69.3
Pretectal area
nTPM: 92.4
2007 Male, age 72, unknown 119.2
1817 Female, age 42, unknown 105.5
1815 Male, age 53, unknown 104.9
1944 Female, age 72, unknown 104.3
1816 Male, age 51, unknown 103.4
2407 Male, age 75, both hemispheres 101.4
2667 Female, age 75, unknown 88.9
2273 Male, age 74, both hemispheres 84.9
2316 Male, age 76, right hemisphere 74.5
2825 Male, age 18, unknown 70.2
2224 Female, age 72, unknown 59.6
Red nucleus
nTPM: 112.0
2785 Male, age 18, unknown 143.7
1865 Male, age 51, unknown 120.5
1904 Male, age 53, unknown 118.3
2588 Male, age 74, left hemisphere 118.1
2584 Male, age 75, left hemisphere 115.9
2769 Male, age 72, unknown 114.5
2823 Male, age 76, right hemisphere 112.7
2227 Male, age 72, unknown 112.2
1821 Female, age 72, unknown 101.9
1954 Female, age 42, unknown 100.2
2503 Female, age 72, unknown 98.8
2725 Female, age 75, unknown 87.7
Substantia nigra
nTPM: 79.8
2583 Male, age 75, right hemisphere 110.6
1889 Female, age 72, unknown 92.3
1851 Male, age 51, unknown 80.5
2590 Female, age 75, unknown 77.5
1916 Female, age 42, unknown 77.0
2409 Female, age 72, unknown 76.9
2699 Male, age 18, unknown 75.4
1941 Male, age 53, unknown 75.2
2241 Male, age 72, unknown 69.2
2665 Male, age 74, both hemispheres 63.4
Superior colliculus
nTPM: 91.5
1995 Male, age 72, unknown 109.9
1913 Female, age 42, unknown 109.3
2668 Female, age 75, unknown 103.7
2087 Female, age 72, unknown 93.5
2261 Male, age 18, unknown 89.6
2664 Male, age 75, both hemispheres 88.7
2587 Male, age 74, left hemisphere 86.6
1839 Male, age 51, unknown 78.4
1796 Male, age 53, unknown 78.3
1895 Male, age 76, right hemisphere 77.0
Ventral tegmental area
nTPM: 82.4
2223 Female, age 72, unknown 102.4
2410 Female, age 72, unknown 96.4
2218 Male, age 76, both hemispheres 82.0
1942 Male, age 51, unknown 75.6
2021 Male, age 53, unknown 71.4
1915 Female, age 42, unknown 66.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.0
Samples: 139

Max nTPM: 150.4
Min nTPM: 19.5
Std nTPM: 17.8
Median nTPM: 49.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 150.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 148.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 92.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 90.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 88.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 87.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 80.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 74.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 73.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 70.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.2
FF:10158-103A5 76 years, female 143.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 130.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.9
Samples: 4

Max nTPM: 139.7
Min nTPM: 58.2
Sample A Female 93.0
Sample B Female 58.2
Sample C Male 84.8
Sample D Male 139.7
Midbrain
nTPM: 130.4
Samples: 4

Max nTPM: 220.3
Min nTPM: 77.3
Sample A Female 220.3
Sample B Female 77.3
Sample C Male 137.3
Sample D Male 86.8
Periaqueductal gray
nTPM: 67.9
Samples: 3

Max nTPM: 74.7
Min nTPM: 59.7
Sample B Female 74.7
Sample C Male 59.7
Sample D Male 69.2
Superior colliculi
nTPM: 105.6
Samples: 4

Max nTPM: 142.8
Min nTPM: 59.8
Sample A Female 94.1
Sample B Female 59.8
Sample C Male 142.8
Sample D Male 125.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.6
Samples: 4

Max nTPM: 46.1
Min nTPM: 43.0
Sample A Male 43.0
Sample B Male 44.8
Sample C Female 44.4
Sample D Female 46.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
68845275 Antisense, RP_050224_01_E01, Mouse strain C57BL/6J (56 days, male) 7.0
72077454 Antisense, RP_051017_03_A08, Mouse strain C57BL/6J (56 days, male) 4.8

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