HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:36.0 nTPM
HPA Brain:44.8 nTPM
GTEx:36.0 nTPM
FANTOM5:269.7 Scaled Tags Per Million
Pig:33.0 nTPM
Mouse:19.6 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050977
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.8
Sample id Sample description nTPM
Hippocampus
nTPM: 41.2
2529 Female, age 94, left hemisphere 48.5
1898 Male, age 80, left hemisphere 45.0
2621 Female, age 67, right hemisphere 42.6
1911 Female, age 85, right hemisphere 39.3
2148 Female, age 91, left hemisphere 39.3
1855 Male, age 76, left hemisphere 32.6
Dentate gyrus
nTPM: 39.3
2246 Female, age 85, both hemispheres 45.0
2010 Male, age 76, both hemispheres 44.9
2530 Female, age 94, left hemisphere 43.2
2528 Male, age 74, both hemispheres 35.3
2531 Female, age 67, both hemispheres 34.7
1927 Female, age 91, both hemispheres 32.8
Entorhinal gyrus
nTPM: 39.5
2117 Female, age 91, right hemisphere 45.1
1938 Female, age 85, left hemisphere 40.1
2686 Male, age 75, right hemisphere 40.1
1787 Male, age 76, left hemisphere 39.4
2764 Male, age 80, right hemisphere 38.7
2613 Female, age 94, left hemisphere 33.4
Hippocampus, CA1
nTPM: 42.0
2749 Male, age 80, left hemisphere 51.9
2527 Male, age 74, both hemispheres 48.1
1873 Female, age 85, both hemispheres 43.2
2045 Male, age 76, both hemispheres 35.4
2082 Female, age 91, right hemisphere 31.3
Hippocampus, CA2
nTPM: 39.0
1892 Male, age 76, both hemispheres 45.0
2249 Male, age 74, both hemispheres 40.2
2437 Female, age 94, left hemisphere 39.7
2113 Female, age 91, right hemisphere 37.7
1940 Female, age 85, left hemisphere 37.5
1963 Male, age 80, left hemisphere 33.9
Hippocampus, CA3
nTPM: 39.6
1867 Male, age 76, both hemispheres 45.0
2137 Male, age 80, left hemisphere 41.7
2436 Male, age 74, both hemispheres 40.2
1891 Female, age 85, both hemispheres 38.0
2861 Female, age 67, both hemispheres 37.3
2620 Female, age 94, left hemisphere 35.8
Parahippocampal cortex
nTPM: 44.8
2245 Female, age 91, both hemispheres 61.2
2018 Male, age 76, both hemispheres 49.3
2532 Female, age 72, left hemisphere 45.8
2692 Male, age 74, both hemispheres 44.2
1933 Female, age 85, both hemispheres 43.8
2250 Female, age 67, right hemisphere 43.8
2622 Female, age 67, right hemisphere 41.7
1850 Male, age 80, both hemispheres 39.8
2693 Female, age 94, both hemispheres 39.3
1990 Female, age 91, right hemisphere 39.0
Perirhinal gyrus
nTPM: 36.7
2521 Female, age 94, right hemisphere 41.0
2848 Male, age 76, right hemisphere 39.7
1841 Female, age 85, right hemisphere 37.3
1794 Male, age 80, right hemisphere 34.2
1847 Female, age 91, left hemisphere 31.2
Subiculum
nTPM: 42.2
2438 Female, age 94, left hemisphere 47.4
2042 Male, age 76, both hemispheres 46.7
2619 Male, age 74, both hemispheres 42.5
1901 Male, age 80, both hemispheres 40.8
1977 Female, age 85, both hemispheres 39.1
2729 Female, age 91, right hemisphere 36.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.0
Samples: 197

Max nTPM: 69.1
Min nTPM: 21.4
Std nTPM: 7.0
Median nTPM: 36.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 69.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 56.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 56.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 54.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 53.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 52.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 50.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 48.8
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 47.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 46.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 46.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 269.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 269.7
FF:10169-103B7 60 years, female 319.8
FF:10153-102I9 76 years, female 219.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 33.0
Pig sample Sample description nTPM
Subiculum
nTPM: 32.3
Samples: 4

Max nTPM: 38.9
Min nTPM: 28.8
Sample A Female 38.9
Sample B Female 30.3
Sample C Male 28.8
Sample D Male 31.2
Dorsal hippocampus
nTPM: 33.0
Samples: 4

Max nTPM: 42.7
Min nTPM: 25.4
Sample A Female 42.7
Sample B Female 29.2
Sample C Male 34.6
Sample D Male 25.4
Entorhinal cortex
nTPM: 31.1
Samples: 4

Max nTPM: 31.9
Min nTPM: 30.7
Sample A Female 31.9
Sample B Female 31.0
Sample C Male 30.8
Sample D Male 30.7
Ventral hippocampus
nTPM: 28.7
Samples: 4

Max nTPM: 34.5
Min nTPM: 25.4
Sample A Female 34.5
Sample B Female 25.4
Sample C Male 26.8
Sample D Male 28.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 19.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.6
Samples: 4

Max nTPM: 20.0
Min nTPM: 19.4
Sample A Male 19.6
Sample B Male 20.0
Sample C Female 19.5
Sample D Female 19.4
Hippocampal formation
nTPM: 18.6
Samples: 4

Max nTPM: 19.2
Min nTPM: 17.7
Sample A Male 19.1
Sample B Male 17.7
Sample C Female 19.2
Sample D Female 18.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
71608352 Antisense, RP_050927_01_E08, Mouse strain C57BL/6J (56 days, male) 5.4
321196 Antisense, RP_040617_01_B04, Mouse strain C57BL/6J (56 days, male) 2.8

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