MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:26.5 nTPM
GTEx:3.8 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:44.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.4
2019 Male, age 18, unknown 29.7
2411 Female, age 72, unknown 24.7
2219 Male, age 76, both hemispheres 23.7
1830 Male, age 51, unknown 23.6
1833 Male, age 53, unknown 23.5
2586 Male, age 75, left hemisphere 23.1
1827 Male, age 72, unknown 22.1
2828 Female, age 72, unknown 22.0
2666 Male, age 74, left hemisphere 21.7
1870 Female, age 42, unknown 20.1
Dorsal raphe nucleus
nTPM: 21.0
1828 Male, age 53, unknown 22.4
2047 Male, age 72, unknown 22.2
2750 Male, age 76, both hemispheres 21.7
2298 Female, age 72, unknown 20.1
2016 Female, age 72, unknown 18.4
Inferior colliculus
nTPM: 24.4
1890 Male, age 53, unknown 26.4
2097 Female, age 72, unknown 26.1
2849 Male, age 72, unknown 22.8
1848 Female, age 42, unknown 22.1
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 20.3
1795 Male, age 51, unknown 20.8
2502 Female, age 75, unknown 20.4
1947 Male, age 18, unknown 19.7
Periaquaductal grey, dorsal
nTPM: 23.2
2464 Female, age 72, unknown 24.0
2850 Male, age 76, both hemispheres 23.5
1831 Male, age 72, unknown 22.9
1840 Male, age 53, unknown 22.2
Periaquaductal grey, lateral
nTPM: 21.2
2272 Male, age 74, both hemispheres 22.5
2140 Male, age 76, both hemispheres 21.5
2053 Male, age 18, unknown 19.6
Pretectal area
nTPM: 26.5
1816 Male, age 51, unknown 32.0
2007 Male, age 72, unknown 31.1
1944 Female, age 72, unknown 30.4
1817 Female, age 42, unknown 29.1
1815 Male, age 53, unknown 28.1
2407 Male, age 75, both hemispheres 25.4
2224 Female, age 72, unknown 25.0
2273 Male, age 74, both hemispheres 24.8
2316 Male, age 76, right hemisphere 23.8
2667 Female, age 75, unknown 22.8
2825 Male, age 18, unknown 19.4
Red nucleus
nTPM: 23.0
2785 Male, age 18, unknown 29.3
2584 Male, age 75, left hemisphere 28.1
2823 Male, age 76, right hemisphere 24.9
1865 Male, age 51, unknown 23.4
2588 Male, age 74, left hemisphere 23.1
2227 Male, age 72, unknown 21.8
1904 Male, age 53, unknown 21.7
2725 Female, age 75, unknown 21.5
1821 Female, age 72, unknown 21.2
2769 Male, age 72, unknown 20.6
1954 Female, age 42, unknown 20.5
2503 Female, age 72, unknown 19.6
Substantia nigra
nTPM: 25.0
1889 Female, age 72, unknown 28.5
2241 Male, age 72, unknown 28.4
1941 Male, age 53, unknown 25.9
1916 Female, age 42, unknown 25.6
2590 Female, age 75, unknown 25.6
2409 Female, age 72, unknown 25.3
2583 Male, age 75, right hemisphere 24.9
1851 Male, age 51, unknown 23.0
2665 Male, age 74, both hemispheres 22.3
2699 Male, age 18, unknown 20.1
Superior colliculus
nTPM: 24.8
2668 Female, age 75, unknown 29.1
2261 Male, age 18, unknown 27.8
2087 Female, age 72, unknown 27.7
2664 Male, age 75, both hemispheres 27.3
1913 Female, age 42, unknown 23.9
1796 Male, age 53, unknown 23.2
1895 Male, age 76, right hemisphere 23.1
1995 Male, age 72, unknown 22.7
2587 Male, age 74, left hemisphere 21.8
1839 Male, age 51, unknown 21.6
Ventral tegmental area
nTPM: 22.6
2218 Male, age 76, both hemispheres 25.9
2410 Female, age 72, unknown 24.6
2223 Female, age 72, unknown 23.0
1942 Male, age 51, unknown 21.4
1915 Female, age 42, unknown 20.7
2021 Male, age 53, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 11.2
Min nTPM: 1.6
Std nTPM: 1.5
Median nTPM: 3.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 11.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 7.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 6.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 5.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 5.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 5.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 5.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 24.4
Sample A Female 24.4
Sample B Female 28.0
Sample C Male 30.7
Sample D Male 29.1
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 36.5
Min nTPM: 21.5
Sample A Female 21.5
Sample B Female 28.8
Sample C Male 36.5
Sample D Male 34.5
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 29.4
Min nTPM: 26.4
Sample B Female 26.4
Sample C Male 29.4
Sample D Male 28.8
Superior colliculi
nTPM: 29.8
Samples: 4

Max nTPM: 35.5
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 28.6
Sample C Male 35.5
Sample D Male 30.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 41.0
Sample A Male 41.0
Sample B Male 46.8
Sample C Female 47.1
Sample D Female 44.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70429136 Antisense, RP_050614_01_A11, Mouse strain C57BL/6J (56 days, male) 0.0
71211389 Antisense, RP_050816_01_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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