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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
97.1
nTPM
FANTOM5:
251.3
Scaled Tags Per Million
Pig:
184.0
nTPM
Allen mouse:
7.1
Expression energy
PONS - HPA Brain RNA-seq
Max nTPM
97.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 63.2
2188
Female, age 91, both hemispheres
68.7
2301
Female, age 85, both hemispheres
65.9
2090
Male, age 80, both hemispheres
60.5
1984
Male, age 76, both hemispheres
57.7
Dorsal cochlear nucleus nTPM: 65.0
2187
Female, age 91, both hemispheres
78.1
2802
Male, age 74, right hemisphere
69.3
2058
Male, age 76, both hemispheres
60.7
2378
Male, age 80, both hemispheres
60.7
2370
Male, age 61, both hemispheres
56.3
Dorsal tegmental nucleus nTPM: 73.9
2083
Male, age 80, both hemispheres
83.8
2326
Male, age 74, both hemispheres
77.0
2358
Male, age 61, both hemispheres
72.7
1936
Male, age 76, left hemisphere
62.2
Dorsolateral tegmental area nTPM: 72.2
2654
Male, age 80, both hemispheres
86.6
2751
Female, age 85, both hemispheres
75.7
2141
Male, age 76, both hemispheres
71.0
2360
Male, age 74, both hemispheres
69.1
2337
Male, age 61, both hemispheres
58.5
Kolliker-Fuse nucleus nTPM: 78.5
2793
Female, age 91, left hemisphere
80.9
2163
Male, age 80, both hemispheres
78.2
2315
Male, age 76, right hemisphere
76.4
Lateral lemniscal nuclei nTPM: 71.6
2169
Male, age 76, both hemispheres
91.8
2746
Female, age 85, left hemisphere
74.7
2453
Male, age 74, right hemisphere
69.0
2036
Male, age 80, both hemispheres
65.0
2320
Female, age 91, left hemisphere
57.6
Lateral parabrachial nucleus nTPM: 71.3
2139
Female, age 85, right hemisphere
88.6
2013
Male, age 80, both hemispheres
74.2
2792
Male, age 76, both hemispheres
62.7
2790
Male, age 61, both hemispheres
59.5
Lateral vestibular nucleus nTPM: 68.2
2184
Male, age 76, both hemispheres
70.2
2311
Male, age 80, both hemispheres
66.1
Locus coeruleus nTPM: 97.1
2123
Female, age 91, both hemispheres
118.3
2014
Male, age 55, unknown
115.7
2720
Male, age 74, both hemispheres
105.9
2317
Female, age 72, unknown
85.4
2162
Male, age 80, both hemispheres
84.9
2788
Male, age 74, unknown
84.7
1980
Male, age 76, both hemispheres
84.6
Medial parabrachial nucleus nTPM: 72.2
2170
Female, age 91, both hemispheres
89.1
2854
Male, age 80, both hemispheres
82.6
2786
Male, age 76, both hemispheres
65.3
2156
Male, age 61, both hemispheres
62.1
2463
Female, age 85, right hemisphere
62.0
Medial periolivary nuclei nTPM: 77.5
2171
Female, age 85, both hemispheres
94.5
2791
Male, age 74, right hemisphere
90.3
2063
Male, age 76, both hemispheres
87.9
2081
Male, age 80, both hemispheres
57.7
2458
Female, age 91, both hemispheres
57.1
Motor facial nucleus nTPM: 77.2
2365
Male, age 74, right hemisphere
96.7
2062
Male, age 76, both hemispheres
88.2
2697
Female, age 85, both hemispheres
86.6
2327
Male, age 80, both hemispheres
71.7
2795
Female, age 91, both hemispheres
62.3
2126
Male, age 61, both hemispheres
57.8
Motor trigeminal nucleus nTPM: 66.7
2560
Male, age 74, both hemispheres
74.0
2335
Male, age 61, both hemispheres
69.1
2079
Male, age 80, both hemispheres
68.5
2309
Male, age 76, both hemispheres
64.8
2321
Female, age 91, both hemispheres
57.1
Nuclei of the trapezoid body nTPM: 76.4
1983
Male, age 76, both hemispheres
92.1
2159
Male, age 61, both hemispheres
92.1
2735
Female, age 85, both hemispheres
85.8
2166
Male, age 80, both hemispheres
60.5
2368
Female, age 91, both hemispheres
51.3
Nucleus raphe magnus nTPM: 88.1
2160
Male, age 61, both hemispheres
116.9
2172
Female, age 85, both hemispheres
101.4
2455
Male, age 74, both hemispheres
95.8
2051
Male, age 76, both hemispheres
82.0
2328
Male, age 80, both hemispheres
73.9
2459
Female, age 91, both hemispheres
58.7
Paramedian reticular nucleus nTPM: 80.3
2050
Female, age 85, both hemispheres
97.2
2313
Male, age 61, both hemispheres
83.9
2057
Male, age 80, both hemispheres
77.6
2052
Male, age 76, both hemispheres
62.6
Pedunculopontine tegmental nucleus nTPM: 78.2
2334
Male, age 80, both hemispheres
84.4
1921
Female, age 85, both hemispheres
80.9
2338
Male, age 61, both hemispheres
69.4
Pontine nuclei nTPM: 90.9
1863
Male, age 55, unknown
112.9
2787
Female, age 85, both hemispheres
112.7
2454
Male, age 74, left hemisphere
98.9
2109
Female, age 72, unknown
92.9
2727
Male, age 61, right hemisphere
90.3
1968
Male, age 76, left hemisphere
86.5
2319
Female, age 91, both hemispheres
72.0
2115
Male, age 80, left hemisphere
61.1
Pontine raphe nucleus nTPM: 80.2
2853
Male, age 76, midline
80.5
2122
Female, age 85, midline
79.8
Posteroventral cochlear nucleus nTPM: 64.0
2752
Female, age 85, both hemispheres
81.5
2070
Male, age 76, both hemispheres
69.2
2135
Female, age 91, both hemispheres
61.3
2341
Male, age 80, both hemispheres
56.4
2371
Male, age 61, both hemispheres
51.8
Principal sensory trigeminal nucleus nTPM: 73.8
2158
Male, age 61, both hemispheres
94.0
2008
Male, age 80, left hemisphere
73.0
2324
Male, age 76, both hemispheres
66.7
2367
Female, age 91, left hemisphere
61.5
Reticular pontine nucleus, caudal nTPM: 72.3
2092
Male, age 76, both hemispheres
82.8
2559
Male, age 74, both hemispheres
74.4
2332
Male, age 80, right hemisphere
72.2
2457
Female, age 91, both hemispheres
59.8
Reticular pontine nucleus, oral nTPM: 81.1
2361
Male, age 74, both hemispheres
96.7
2012
Female, age 85, both hemispheres
84.7
2167
Male, age 76, both hemispheres
79.5
1939
Male, age 80, both hemispheres
77.1
2366
Female, age 91, both hemispheres
67.5
Reticulotegmental nucleus nTPM: 69.1
2325
Male, age 76, both hemispheres
78.4
2322
Female, age 91, both hemispheres
71.3
2452
Male, age 74, both hemispheres
64.2
2333
Male, age 80, both hemispheres
62.4
Spinal trigeminal nucleus, oral nTPM: 70.7
2737
Female, age 85, both hemispheres
73.3
2164
Male, age 80, both hemispheres
70.2
1978
Male, age 76, both hemispheres
68.6
Subcoeruleus area nTPM: 74.8
2323
Female, age 91, left hemisphere
86.9
1958
Male, age 80, both hemispheres
86.1
2369
Female, age 85, left hemisphere
74.9
2089
Male, age 76, left hemisphere
63.2
2451
Male, age 74, both hemispheres
62.9
Superior olive nTPM: 81.2
2364
Male, age 74, right hemisphere
101.8
1875
Female, age 85, both hemispheres
96.7
2020
Male, age 76, both hemispheres
78.3
2329
Male, age 80, right hemisphere
71.4
2561
Female, age 91, both hemispheres
57.8
Ventral periolivary nuclei nTPM: 75.2
2130
Female, age 85, both hemispheres
87.4
2165
Male, age 80, both hemispheres
80.1
2023
Male, age 76, both hemispheres
78.0
2794
Female, age 91, left hemisphere
55.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 73.2
2840
Female, age 85, both hemispheres
89.8
2449
Male, age 74, both hemispheres
85.8
1959
Male, age 76, both hemispheres
74.3
2359
Male, age 61, both hemispheres
72.8
2161
Male, age 80, both hemispheres
65.2
2456
Female, age 91, both hemispheres
51.4
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
184.0
Pig sample
Sample description
nTPM
Pons nTPM: 184.0
Samples: 4
Max nTPM: 207.2
Min nTPM: 147.2
Sample A
Female
207.2
Sample B
Female
147.2
Sample C
Male
190.4
Sample D
Male
191.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
