MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.6 nTPM
HPA Brain:44.2 nTPM
GTEx:122.6 nTPM
FANTOM5:173.4 Scaled Tags Per Million
Pig:127.3 nTPM
Mouse:106.3 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.9
2219 Male, age 76, both hemispheres 36.0
1830 Male, age 51, unknown 31.8
1833 Male, age 53, unknown 31.7
1870 Female, age 42, unknown 30.4
2586 Male, age 75, left hemisphere 29.7
1827 Male, age 72, unknown 29.6
2019 Male, age 18, unknown 28.5
2828 Female, age 72, unknown 27.7
2411 Female, age 72, unknown 27.4
2666 Male, age 74, left hemisphere 25.8
Dorsal raphe nucleus
nTPM: 32.7
2298 Female, age 72, unknown 40.9
2016 Female, age 72, unknown 33.9
1828 Male, age 53, unknown 31.5
2750 Male, age 76, both hemispheres 29.9
2047 Male, age 72, unknown 27.2
Inferior colliculus
nTPM: 32.4
1848 Female, age 42, unknown 34.0
2097 Female, age 72, unknown 33.7
2849 Male, age 72, unknown 31.1
1890 Male, age 53, unknown 30.8
Median raphe nucleus
nTPM: 32.2
2220 Male, age 76, midline 32.2
Periaquaductal grey, anterior
nTPM: 34.1
2502 Female, age 75, unknown 40.7
1947 Male, age 18, unknown 34.7
1795 Male, age 51, unknown 26.9
Periaquaductal grey, dorsal
nTPM: 33.3
1831 Male, age 72, unknown 37.3
2850 Male, age 76, both hemispheres 35.2
1840 Male, age 53, unknown 33.5
2464 Female, age 72, unknown 27.1
Periaquaductal grey, lateral
nTPM: 27.7
2053 Male, age 18, unknown 31.9
2272 Male, age 74, both hemispheres 28.7
2140 Male, age 76, both hemispheres 22.5
Pretectal area
nTPM: 30.5
2407 Male, age 75, both hemispheres 37.4
2825 Male, age 18, unknown 36.9
2224 Female, age 72, unknown 33.1
1815 Male, age 53, unknown 32.5
1944 Female, age 72, unknown 31.1
2667 Female, age 75, unknown 30.5
1817 Female, age 42, unknown 30.0
2273 Male, age 74, both hemispheres 28.3
1816 Male, age 51, unknown 27.0
2007 Male, age 72, unknown 26.0
2316 Male, age 76, right hemisphere 22.7
Red nucleus
nTPM: 32.7
1821 Female, age 72, unknown 43.0
1904 Male, age 53, unknown 36.7
2823 Male, age 76, right hemisphere 36.2
2725 Female, age 75, unknown 36.1
1865 Male, age 51, unknown 33.5
1954 Female, age 42, unknown 33.3
2584 Male, age 75, left hemisphere 32.6
2503 Female, age 72, unknown 31.0
2227 Male, age 72, unknown 29.9
2588 Male, age 74, left hemisphere 27.6
2785 Male, age 18, unknown 26.3
2769 Male, age 72, unknown 26.0
Substantia nigra
nTPM: 44.2
2241 Male, age 72, unknown 69.0
2409 Female, age 72, unknown 57.5
1916 Female, age 42, unknown 51.9
2699 Male, age 18, unknown 47.2
1851 Male, age 51, unknown 46.1
1941 Male, age 53, unknown 43.0
1889 Female, age 72, unknown 37.2
2590 Female, age 75, unknown 36.3
2665 Male, age 74, both hemispheres 28.5
2583 Male, age 75, right hemisphere 25.8
Superior colliculus
nTPM: 33.2
1913 Female, age 42, unknown 41.4
2587 Male, age 74, left hemisphere 39.8
1895 Male, age 76, right hemisphere 36.8
1839 Male, age 51, unknown 35.9
1995 Male, age 72, unknown 34.7
2664 Male, age 75, both hemispheres 34.5
2087 Female, age 72, unknown 28.7
2668 Female, age 75, unknown 28.1
1796 Male, age 53, unknown 26.0
2261 Male, age 18, unknown 25.8
Ventral tegmental area
nTPM: 36.5
1915 Female, age 42, unknown 39.0
1942 Male, age 51, unknown 38.6
2410 Female, age 72, unknown 37.3
2021 Male, age 53, unknown 37.1
2223 Female, age 72, unknown 34.6
2218 Male, age 76, both hemispheres 32.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 122.6
GTEx sample id Sample description nTPM
95.6114.8142.869.0211.7020406080100120140160180200220240
Brain - Substantia nigra
Average nTPM: 122.6
Samples: 139

Max nTPM: 250.2
Min nTPM: 69.0
Std nTPM: 35.8
Median nTPM: 114.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 250.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 246.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 211.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 207.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 201.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 194.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 186.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 182.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 182.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 179.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 178.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 173.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 173.4
FF:10158-103A5 76 years, female 173.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.3
Pig sample Sample description nTPM
103.3118.5137.7100.7152.4020406080100120140
 		Substantia nigra
nTPM: 122.5
Samples: 4

Max nTPM: 152.4
Min nTPM: 100.7
Sample A Female 152.4
Sample B Female 132.8
Sample C Male 100.7
Sample D Male 104.2
101.9113.1136.488.3186.4020406080100120140160180
 		Midbrain
nTPM: 125.2
Samples: 4

Max nTPM: 186.4
Min nTPM: 88.3
Sample A Female 186.4
Sample B Female 119.7
Sample C Male 106.4
Sample D Male 88.3
93.394.699.291.9103.70102030405060708090100
 		Periaqueductal gray
nTPM: 96.7
Samples: 3

Max nTPM: 103.7
Min nTPM: 91.9
Sample B Female 94.6
Sample C Male 103.7
Sample D Male 91.9
115.5126.8138.6112.3143.5020406080100120140
 		Superior colliculi
nTPM: 127.4
Samples: 4

Max nTPM: 143.5
Min nTPM: 112.3
Sample A Female 137.0
Sample B Female 143.5
Sample C Male 116.6
Sample D Male 112.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 106.3
Mouse sample Sample description nTPM
104.2107.3109.3101.3109.40102030405060708090100
 		Midbrain
nTPM: 106.3
Samples: 4

Max nTPM: 109.4
Min nTPM: 101.3
Sample A Male 109.4
Sample B Male 109.3
Sample C Female 105.2
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
68545201 Antisense, RP_050118_03_B01, Mouse strain C57BL/6J (56 days, male) 8.2

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