HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:19.2 nTPM
HPA Brain:30.6 nTPM
GTEx:19.2 nTPM
FANTOM5:47.0 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:61.9 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026085
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.6
Sample id Sample description nTPM
Hippocampus
nTPM: 27.6
1898 Male, age 80, left hemisphere 32.8
1911 Female, age 85, right hemisphere 29.6
2529 Female, age 94, left hemisphere 26.5
1855 Male, age 76, left hemisphere 26.3
2621 Female, age 67, right hemisphere 25.4
2148 Female, age 91, left hemisphere 24.9
Dentate gyrus
nTPM: 27.1
1927 Female, age 91, both hemispheres 29.5
2010 Male, age 76, both hemispheres 28.5
2530 Female, age 94, left hemisphere 27.3
2528 Male, age 74, both hemispheres 27.0
2246 Female, age 85, both hemispheres 26.7
2531 Female, age 67, both hemispheres 23.5
Entorhinal gyrus
nTPM: 27.8
2117 Female, age 91, right hemisphere 31.4
1938 Female, age 85, left hemisphere 30.3
1787 Male, age 76, left hemisphere 28.5
2764 Male, age 80, right hemisphere 27.7
2613 Female, age 94, left hemisphere 25.8
2686 Male, age 75, right hemisphere 23.1
Hippocampus, CA1
nTPM: 28.1
2749 Male, age 80, left hemisphere 34.5
1873 Female, age 85, both hemispheres 28.8
2527 Male, age 74, both hemispheres 28.1
2045 Male, age 76, both hemispheres 25.4
2082 Female, age 91, right hemisphere 23.7
Hippocampus, CA2
nTPM: 28.1
1892 Male, age 76, both hemispheres 31.0
1963 Male, age 80, left hemisphere 30.8
2249 Male, age 74, both hemispheres 30.2
2437 Female, age 94, left hemisphere 26.8
2113 Female, age 91, right hemisphere 26.1
1940 Female, age 85, left hemisphere 23.9
Hippocampus, CA3
nTPM: 26.9
2137 Male, age 80, left hemisphere 33.4
1891 Female, age 85, both hemispheres 31.8
1867 Male, age 76, both hemispheres 27.9
2436 Male, age 74, both hemispheres 25.8
2620 Female, age 94, left hemisphere 24.0
2861 Female, age 67, both hemispheres 18.2
Parahippocampal cortex
nTPM: 28.1
1850 Male, age 80, both hemispheres 34.0
1990 Female, age 91, right hemisphere 31.2
1933 Female, age 85, both hemispheres 30.4
2532 Female, age 72, left hemisphere 29.8
2693 Female, age 94, both hemispheres 28.9
2692 Male, age 74, both hemispheres 27.7
2250 Female, age 67, right hemisphere 26.8
2245 Female, age 91, both hemispheres 26.7
2018 Male, age 76, both hemispheres 26.3
2622 Female, age 67, right hemisphere 19.7
Perirhinal gyrus
nTPM: 30.6
1847 Female, age 91, left hemisphere 31.9
1794 Male, age 80, right hemisphere 31.7
1841 Female, age 85, right hemisphere 31.3
2521 Female, age 94, right hemisphere 30.1
2848 Male, age 76, right hemisphere 28.1
Subiculum
nTPM: 28.7
1901 Male, age 80, both hemispheres 33.1
1977 Female, age 85, both hemispheres 30.9
2438 Female, age 94, left hemisphere 30.6
2042 Male, age 76, both hemispheres 27.0
2729 Female, age 91, right hemisphere 25.7
2619 Male, age 74, both hemispheres 24.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.2
Samples: 197

Max nTPM: 33.6
Min nTPM: 8.3
Std nTPM: 3.9
Median nTPM: 18.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 33.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 32.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 30.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 30.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 30.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 28.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 28.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 28.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 28.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 27.9
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 26.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.0
FF:10169-103B7 60 years, female 65.4
FF:10153-102I9 76 years, female 28.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Subiculum
nTPM: 27.3
Samples: 4

Max nTPM: 33.8
Min nTPM: 24.8
Sample A Female 33.8
Sample B Female 25.5
Sample C Male 24.9
Sample D Male 24.8
Dorsal hippocampus
nTPM: 35.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 28.2
Sample A Female 41.9
Sample B Female 35.1
Sample C Male 35.4
Sample D Male 28.2
Entorhinal cortex
nTPM: 28.5
Samples: 4

Max nTPM: 31.4
Min nTPM: 25.0
Sample A Female 28.2
Sample B Female 31.4
Sample C Male 29.3
Sample D Male 25.0
Ventral hippocampus
nTPM: 28.6
Samples: 4

Max nTPM: 33.6
Min nTPM: 24.8
Sample A Female 30.7
Sample B Female 24.8
Sample C Male 25.2
Sample D Male 33.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 60.9
Samples: 4

Max nTPM: 62.9
Min nTPM: 59.0
Sample A Male 59.0
Sample B Male 60.5
Sample C Female 61.2
Sample D Female 62.9
Hippocampal formation
nTPM: 62.0
Samples: 4

Max nTPM: 70.0
Min nTPM: 57.3
Sample A Male 70.0
Sample B Male 60.1
Sample C Female 60.4
Sample D Female 57.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
556985 Antisense, RP_040825_02_G07, Mouse strain C57BL/6J (56 days, male) 3.0

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