MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:56.9 nTPM
GTEx:14.9 nTPM
FANTOM5:60.9 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:24.0 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.4
1827 Male, age 72, unknown 53.9
1830 Male, age 51, unknown 52.3
2828 Female, age 72, unknown 51.4
1833 Male, age 53, unknown 48.7
2411 Female, age 72, unknown 48.3
2219 Male, age 76, both hemispheres 47.0
2666 Male, age 74, left hemisphere 46.8
1870 Female, age 42, unknown 46.3
2019 Male, age 18, unknown 45.9
2586 Male, age 75, left hemisphere 43.5
Dorsal raphe nucleus
nTPM: 47.6
2047 Male, age 72, unknown 52.5
2016 Female, age 72, unknown 49.5
1828 Male, age 53, unknown 46.4
2298 Female, age 72, unknown 45.6
2750 Male, age 76, both hemispheres 44.2
Inferior colliculus
nTPM: 53.2
1848 Female, age 42, unknown 57.1
2849 Male, age 72, unknown 54.1
1890 Male, age 53, unknown 51.3
2097 Female, age 72, unknown 50.2
Median raphe nucleus
nTPM: 45.0
2220 Male, age 76, midline 45.0
Periaquaductal grey, anterior
nTPM: 46.8
1947 Male, age 18, unknown 49.2
1795 Male, age 51, unknown 46.9
2502 Female, age 75, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 56.2
2850 Male, age 76, both hemispheres 62.4
1840 Male, age 53, unknown 56.8
2464 Female, age 72, unknown 53.0
1831 Male, age 72, unknown 52.7
Periaquaductal grey, lateral
nTPM: 56.9
2140 Male, age 76, both hemispheres 61.6
2053 Male, age 18, unknown 56.4
2272 Male, age 74, both hemispheres 52.7
Pretectal area
nTPM: 51.3
2273 Male, age 74, both hemispheres 55.6
1944 Female, age 72, unknown 54.1
1816 Male, age 51, unknown 53.2
2316 Male, age 76, right hemisphere 52.4
1817 Female, age 42, unknown 51.7
1815 Male, age 53, unknown 50.9
2007 Male, age 72, unknown 50.7
2667 Female, age 75, unknown 50.7
2825 Male, age 18, unknown 49.2
2224 Female, age 72, unknown 48.0
2407 Male, age 75, both hemispheres 47.4
Red nucleus
nTPM: 50.2
2503 Female, age 72, unknown 57.6
1954 Female, age 42, unknown 57.0
2588 Male, age 74, left hemisphere 51.7
1904 Male, age 53, unknown 51.6
1865 Male, age 51, unknown 51.3
2725 Female, age 75, unknown 50.2
2785 Male, age 18, unknown 49.6
1821 Female, age 72, unknown 49.1
2823 Male, age 76, right hemisphere 47.3
2769 Male, age 72, unknown 46.7
2227 Male, age 72, unknown 46.4
2584 Male, age 75, left hemisphere 44.2
Substantia nigra
nTPM: 49.6
2409 Female, age 72, unknown 61.9
2590 Female, age 75, unknown 54.4
2699 Male, age 18, unknown 52.4
1889 Female, age 72, unknown 49.6
2583 Male, age 75, right hemisphere 47.9
2241 Male, age 72, unknown 47.6
1851 Male, age 51, unknown 45.9
1941 Male, age 53, unknown 45.9
2665 Male, age 74, both hemispheres 45.7
1916 Female, age 42, unknown 44.9
Superior colliculus
nTPM: 49.4
1796 Male, age 53, unknown 56.1
1913 Female, age 42, unknown 52.6
2587 Male, age 74, left hemisphere 51.7
2087 Female, age 72, unknown 51.6
1995 Male, age 72, unknown 50.6
2261 Male, age 18, unknown 49.2
1895 Male, age 76, right hemisphere 48.2
2668 Female, age 75, unknown 47.4
1839 Male, age 51, unknown 46.2
2664 Male, age 75, both hemispheres 40.5
Ventral tegmental area
nTPM: 47.3
2223 Female, age 72, unknown 50.1
2410 Female, age 72, unknown 49.5
2218 Male, age 76, both hemispheres 47.7
1942 Male, age 51, unknown 46.9
2021 Male, age 53, unknown 45.2
1915 Female, age 42, unknown 44.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 25.5
Min nTPM: 3.5
Std nTPM: 3.5
Median nTPM: 14.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 25.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 23.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 22.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 22.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 21.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 20.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.9
FF:10158-103A5 76 years, female 60.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 33.7
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 33.7
Sample C Male 33.2
Sample D Male 31.5
Midbrain
nTPM: 35.4
Samples: 4

Max nTPM: 41.8
Min nTPM: 32.8
Sample A Female 33.0
Sample B Female 33.9
Sample C Male 41.8
Sample D Male 32.8
Periaqueductal gray
nTPM: 32.7
Samples: 3

Max nTPM: 35.3
Min nTPM: 30.0
Sample B Female 35.3
Sample C Male 32.8
Sample D Male 30.0
Superior colliculi
nTPM: 33.7
Samples: 4

Max nTPM: 37.2
Min nTPM: 29.0
Sample A Female 29.0
Sample B Female 35.5
Sample C Male 37.2
Sample D Male 33.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.0
Samples: 4

Max nTPM: 26.3
Min nTPM: 19.1
Sample A Male 19.1
Sample B Male 26.3
Sample C Female 25.6
Sample D Female 24.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
69014937 Antisense, RP_050310_02_A07, Mouse strain C57BL/6J (56 days, male) 5.8

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