HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:24.8 nTPM
HPA Brain:12.3 nTPM
GTEx:24.8 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:20.2 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023361
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Hippocampus
nTPM: 9.9
1855 Male, age 76, left hemisphere 17.2
2621 Female, age 67, right hemisphere 12.7
1898 Male, age 80, left hemisphere 9.2
1911 Female, age 85, right hemisphere 8.4
2529 Female, age 94, left hemisphere 6.8
2148 Female, age 91, left hemisphere 4.9
Dentate gyrus
nTPM: 12.3
2246 Female, age 85, both hemispheres 14.5
2010 Male, age 76, both hemispheres 14.3
1927 Female, age 91, both hemispheres 14.1
2530 Female, age 94, left hemisphere 11.8
2528 Male, age 74, both hemispheres 10.1
2531 Female, age 67, both hemispheres 9.1
Entorhinal gyrus
nTPM: 8.7
2613 Female, age 94, left hemisphere 13.7
1938 Female, age 85, left hemisphere 9.9
2764 Male, age 80, right hemisphere 9.2
1787 Male, age 76, left hemisphere 7.3
2117 Female, age 91, right hemisphere 6.4
2686 Male, age 75, right hemisphere 6.0
Hippocampus, CA1
nTPM: 10.7
2527 Male, age 74, both hemispheres 16.4
1873 Female, age 85, both hemispheres 12.1
2749 Male, age 80, left hemisphere 10.4
2045 Male, age 76, both hemispheres 8.3
2082 Female, age 91, right hemisphere 6.2
Hippocampus, CA2
nTPM: 11.3
1963 Male, age 80, left hemisphere 17.1
1892 Male, age 76, both hemispheres 16.8
2437 Female, age 94, left hemisphere 13.2
2249 Male, age 74, both hemispheres 9.3
1940 Female, age 85, left hemisphere 6.4
2113 Female, age 91, right hemisphere 5.2
Hippocampus, CA3
nTPM: 10.6
2436 Male, age 74, both hemispheres 20.8
2861 Female, age 67, both hemispheres 20.4
2620 Female, age 94, left hemisphere 7.7
1867 Male, age 76, both hemispheres 7.4
1891 Female, age 85, both hemispheres 4.4
2137 Male, age 80, left hemisphere 3.1
Parahippocampal cortex
nTPM: 9.3
1933 Female, age 85, both hemispheres 13.4
2250 Female, age 67, right hemisphere 12.2
2018 Male, age 76, both hemispheres 11.4
1850 Male, age 80, both hemispheres 10.8
2693 Female, age 94, both hemispheres 9.6
2622 Female, age 67, right hemisphere 9.2
2692 Male, age 74, both hemispheres 8.2
2532 Female, age 72, left hemisphere 6.6
2245 Female, age 91, both hemispheres 6.3
1990 Female, age 91, right hemisphere 5.3
Perirhinal gyrus
nTPM: 10.3
1794 Male, age 80, right hemisphere 15.3
1847 Female, age 91, left hemisphere 12.8
1841 Female, age 85, right hemisphere 9.5
2848 Male, age 76, right hemisphere 7.0
2521 Female, age 94, right hemisphere 6.7
Subiculum
nTPM: 9.0
2042 Male, age 76, both hemispheres 11.3
1901 Male, age 80, both hemispheres 10.9
2438 Female, age 94, left hemisphere 10.3
2729 Female, age 91, right hemisphere 9.6
2619 Male, age 74, both hemispheres 6.2
1977 Female, age 85, both hemispheres 5.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.8
Samples: 197

Max nTPM: 48.0
Min nTPM: 9.8
Std nTPM: 7.5
Median nTPM: 23.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 48.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 46.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 44.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 44.0
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 43.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 41.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 40.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 40.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 40.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 39.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 39.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.2
FF:10169-103B7 60 years, female 17.6
FF:10153-102I9 76 years, female 12.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Subiculum
nTPM: 12.1
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.1
Sample A Female 13.7
Sample B Female 11.6
Sample C Male 12.0
Sample D Male 11.1
Dorsal hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 15.2
Min nTPM: 10.0
Sample A Female 15.2
Sample B Female 13.5
Sample C Male 14.1
Sample D Male 10.0
Entorhinal cortex
nTPM: 11.6
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.3
Sample A Female 12.3
Sample B Female 11.8
Sample C Male 12.1
Sample D Male 10.3
Ventral hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 15.4
Min nTPM: 9.4
Sample A Female 15.4
Sample B Female 9.4
Sample C Male 15.4
Sample D Male 12.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.1
Samples: 4

Max nTPM: 22.7
Min nTPM: 16.2
Sample A Male 16.2
Sample B Male 22.7
Sample C Female 22.0
Sample D Female 19.4
Hippocampal formation
nTPM: 20.2
Samples: 4

Max nTPM: 23.6
Min nTPM: 18.5
Sample A Male 23.6
Sample B Male 18.5
Sample C Female 20.0
Sample D Female 18.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
70919125 Antisense, RP_050712_04_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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