MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA Brain:28.0 nTPM
GTEx:26.6 nTPM
FANTOM5:73.5 Scaled Tags Per Million
Pig:1.1 nTPM
Mouse:30.9 nTPM
Allen mouse:4.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
2586 Male, age 75, left hemisphere 28.6
1833 Male, age 53, unknown 25.6
2411 Female, age 72, unknown 25.0
1870 Female, age 42, unknown 24.8
2019 Male, age 18, unknown 24.3
2219 Male, age 76, both hemispheres 23.9
2828 Female, age 72, unknown 22.7
1830 Male, age 51, unknown 21.9
1827 Male, age 72, unknown 21.5
2666 Male, age 74, left hemisphere 18.1
Dorsal raphe nucleus
nTPM: 26.8
2016 Female, age 72, unknown 30.6
2298 Female, age 72, unknown 26.9
1828 Male, age 53, unknown 25.8
2047 Male, age 72, unknown 25.7
2750 Male, age 76, both hemispheres 24.9
Inferior colliculus
nTPM: 25.2
1848 Female, age 42, unknown 26.0
1890 Male, age 53, unknown 25.3
2849 Male, age 72, unknown 25.1
2097 Female, age 72, unknown 24.6
Median raphe nucleus
nTPM: 21.0
2220 Male, age 76, midline 21.0
Periaquaductal grey, anterior
nTPM: 24.2
1795 Male, age 51, unknown 25.1
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 26.8
1831 Male, age 72, unknown 28.4
1840 Male, age 53, unknown 28.0
2850 Male, age 76, both hemispheres 27.2
2464 Female, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 28.0
2272 Male, age 74, both hemispheres 32.4
2053 Male, age 18, unknown 27.2
2140 Male, age 76, both hemispheres 24.4
Pretectal area
nTPM: 25.9
2273 Male, age 74, both hemispheres 31.5
1816 Male, age 51, unknown 26.9
1944 Female, age 72, unknown 26.8
2667 Female, age 75, unknown 26.5
2316 Male, age 76, right hemisphere 26.0
1815 Male, age 53, unknown 25.9
2224 Female, age 72, unknown 25.3
1817 Female, age 42, unknown 24.3
2407 Male, age 75, both hemispheres 24.2
2007 Male, age 72, unknown 23.9
2825 Male, age 18, unknown 23.9
Red nucleus
nTPM: 24.2
2725 Female, age 75, unknown 30.4
1821 Female, age 72, unknown 25.9
2503 Female, age 72, unknown 25.7
1865 Male, age 51, unknown 25.2
1904 Male, age 53, unknown 24.6
2823 Male, age 76, right hemisphere 24.0
1954 Female, age 42, unknown 23.6
2769 Male, age 72, unknown 22.9
2785 Male, age 18, unknown 22.8
2227 Male, age 72, unknown 22.6
2588 Male, age 74, left hemisphere 21.8
2584 Male, age 75, left hemisphere 20.9
Substantia nigra
nTPM: 26.7
2409 Female, age 72, unknown 35.8
2241 Male, age 72, unknown 32.1
2583 Male, age 75, right hemisphere 28.3
1851 Male, age 51, unknown 27.1
1916 Female, age 42, unknown 26.8
2699 Male, age 18, unknown 26.2
2665 Male, age 74, both hemispheres 24.4
1941 Male, age 53, unknown 23.5
1889 Female, age 72, unknown 22.0
2590 Female, age 75, unknown 20.6
Superior colliculus
nTPM: 23.5
2261 Male, age 18, unknown 28.3
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 24.9
1895 Male, age 76, right hemisphere 24.6
1796 Male, age 53, unknown 24.2
1839 Male, age 51, unknown 24.0
2087 Female, age 72, unknown 24.0
2587 Male, age 74, left hemisphere 23.1
2668 Female, age 75, unknown 22.2
2664 Male, age 75, both hemispheres 14.0
Ventral tegmental area
nTPM: 26.1
2410 Female, age 72, unknown 31.8
1915 Female, age 42, unknown 27.0
2223 Female, age 72, unknown 26.4
2021 Male, age 53, unknown 24.7
2218 Male, age 76, both hemispheres 23.6
1942 Male, age 51, unknown 23.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.6
Samples: 139

Max nTPM: 48.3
Min nTPM: 15.1
Std nTPM: 5.8
Median nTPM: 25.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 46.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 45.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 43.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 42.1
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 38.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 36.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 36.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 35.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 35.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.5
FF:10158-103A5 76 years, female 73.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.6
Sample C Male 1.0
Sample D Male 1.9
Midbrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.5
Sample C Male 0.6
Sample D Male 1.0
Periaqueductal gray
nTPM: 1.1
Samples: 3

Max nTPM: 1.6
Min nTPM: 0.8
Sample B Female 1.6
Sample C Male 0.8
Sample D Male 0.8
Superior colliculi
nTPM: 1.0
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 1.7
Sample C Male 1.3
Sample D Male 0.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 33.8
Min nTPM: 27.6
Sample A Male 29.5
Sample B Male 27.6
Sample C Female 32.6
Sample D Female 33.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.8
81600554 Antisense, RP_080402_04_F07, Mouse strain C57BL/6J (56 days, male) 5.2
70430720 Antisense, RP_050614_01_H09, Mouse strain C57BL/6J (56 days, male) 4.4

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