MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.8 nTPM
HPA Brain:37.9 nTPM
GTEx:116.8 nTPM
FANTOM5:147.6 Scaled Tags Per Million
Pig:26.4 nTPM
Mouse:71.6 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.4
2411 Female, age 72, unknown 38.5
1870 Female, age 42, unknown 37.2
2828 Female, age 72, unknown 37.2
2019 Male, age 18, unknown 36.7
2219 Male, age 76, both hemispheres 34.4
1833 Male, age 53, unknown 34.3
2586 Male, age 75, left hemisphere 33.9
1827 Male, age 72, unknown 33.2
1830 Male, age 51, unknown 30.4
2666 Male, age 74, left hemisphere 28.4
Dorsal raphe nucleus
nTPM: 37.9
2298 Female, age 72, unknown 45.8
2047 Male, age 72, unknown 37.7
2750 Male, age 76, both hemispheres 36.2
2016 Female, age 72, unknown 35.2
1828 Male, age 53, unknown 34.7
Inferior colliculus
nTPM: 33.3
2097 Female, age 72, unknown 35.8
1848 Female, age 42, unknown 34.4
1890 Male, age 53, unknown 32.8
2849 Male, age 72, unknown 30.2
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Periaquaductal grey, anterior
nTPM: 35.1
1795 Male, age 51, unknown 37.2
2502 Female, age 75, unknown 34.5
1947 Male, age 18, unknown 33.6
Periaquaductal grey, dorsal
nTPM: 33.8
1840 Male, age 53, unknown 36.1
2464 Female, age 72, unknown 33.8
2850 Male, age 76, both hemispheres 33.1
1831 Male, age 72, unknown 32.1
Periaquaductal grey, lateral
nTPM: 36.3
2272 Male, age 74, both hemispheres 44.5
2053 Male, age 18, unknown 32.6
2140 Male, age 76, both hemispheres 31.7
Pretectal area
nTPM: 36.3
2273 Male, age 74, both hemispheres 43.5
2224 Female, age 72, unknown 42.0
1817 Female, age 42, unknown 40.4
2667 Female, age 75, unknown 39.8
2007 Male, age 72, unknown 39.4
1944 Female, age 72, unknown 36.9
1815 Male, age 53, unknown 34.7
1816 Male, age 51, unknown 34.4
2825 Male, age 18, unknown 33.3
2316 Male, age 76, right hemisphere 31.5
2407 Male, age 75, both hemispheres 23.7
Red nucleus
nTPM: 36.1
2503 Female, age 72, unknown 41.2
1954 Female, age 42, unknown 39.2
2725 Female, age 75, unknown 38.7
1821 Female, age 72, unknown 38.4
2769 Male, age 72, unknown 38.0
2227 Male, age 72, unknown 37.4
2785 Male, age 18, unknown 36.8
1865 Male, age 51, unknown 36.5
1904 Male, age 53, unknown 36.2
2588 Male, age 74, left hemisphere 33.7
2823 Male, age 76, right hemisphere 31.7
2584 Male, age 75, left hemisphere 26.0
Substantia nigra
nTPM: 34.5
1916 Female, age 42, unknown 41.4
1851 Male, age 51, unknown 39.5
1889 Female, age 72, unknown 37.9
1941 Male, age 53, unknown 36.1
2699 Male, age 18, unknown 36.1
2409 Female, age 72, unknown 34.0
2241 Male, age 72, unknown 32.6
2665 Male, age 74, both hemispheres 30.5
2590 Female, age 75, unknown 29.3
2583 Male, age 75, right hemisphere 27.1
Superior colliculus
nTPM: 32.3
2587 Male, age 74, left hemisphere 35.9
1913 Female, age 42, unknown 34.7
2261 Male, age 18, unknown 34.2
2087 Female, age 72, unknown 34.0
1796 Male, age 53, unknown 33.9
1995 Male, age 72, unknown 33.3
1839 Male, age 51, unknown 32.6
2668 Female, age 75, unknown 31.9
1895 Male, age 76, right hemisphere 28.4
2664 Male, age 75, both hemispheres 24.1
Ventral tegmental area
nTPM: 35.3
2410 Female, age 72, unknown 40.4
2218 Male, age 76, both hemispheres 37.1
1915 Female, age 42, unknown 36.8
2021 Male, age 53, unknown 33.4
1942 Male, age 51, unknown 32.7
2223 Female, age 72, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 116.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.8
Samples: 139

Max nTPM: 221.4
Min nTPM: 61.9
Std nTPM: 29.1
Median nTPM: 111.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 221.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 219.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 216.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 204.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 200.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 176.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 167.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 166.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 159.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 158.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 157.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 147.6
FF:10158-103A5 76 years, female 147.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 29.3
Min nTPM: 21.2
Sample A Female 29.0
Sample B Female 21.2
Sample C Male 29.3
Sample D Male 22.8
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 37.0
Min nTPM: 16.6
Sample A Female 37.0
Sample B Female 26.1
Sample C Male 26.0
Sample D Male 16.6
Periaqueductal gray
nTPM: 25.2
Samples: 3

Max nTPM: 29.5
Min nTPM: 21.6
Sample B Female 24.4
Sample C Male 29.5
Sample D Male 21.6
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 29.8
Min nTPM: 20.7
Sample A Female 29.8
Sample B Female 23.7
Sample C Male 26.6
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.6
Samples: 4

Max nTPM: 77.6
Min nTPM: 65.1
Sample A Male 77.6
Sample B Male 69.6
Sample C Female 65.1
Sample D Female 74.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69671863 Antisense, RP_050428_02_E05, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org