MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.5 nTPM
HPA Brain:28.9 nTPM
GTEx:74.5 nTPM
FANTOM5:408.6 Scaled Tags Per Million
Pig:133.2 nTPM
Mouse:39.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2586 Male, age 75, left hemisphere 36.8
1870 Female, age 42, unknown 32.6
2666 Male, age 74, left hemisphere 30.5
1830 Male, age 51, unknown 24.9
1833 Male, age 53, unknown 23.9
2019 Male, age 18, unknown 23.9
2219 Male, age 76, both hemispheres 23.6
1827 Male, age 72, unknown 23.2
2828 Female, age 72, unknown 21.9
2411 Female, age 72, unknown 16.7
Dorsal raphe nucleus
nTPM: 21.8
2750 Male, age 76, both hemispheres 24.2
1828 Male, age 53, unknown 22.2
2016 Female, age 72, unknown 21.6
2047 Male, age 72, unknown 21.0
2298 Female, age 72, unknown 20.0
Inferior colliculus
nTPM: 28.9
2849 Male, age 72, unknown 36.3
1848 Female, age 42, unknown 27.7
1890 Male, age 53, unknown 27.4
2097 Female, age 72, unknown 24.1
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 22.0
1947 Male, age 18, unknown 25.9
1795 Male, age 51, unknown 21.8
2502 Female, age 75, unknown 18.3
Periaquaductal grey, dorsal
nTPM: 26.2
2850 Male, age 76, both hemispheres 36.6
1831 Male, age 72, unknown 24.9
1840 Male, age 53, unknown 23.7
2464 Female, age 72, unknown 19.5
Periaquaductal grey, lateral
nTPM: 23.6
2140 Male, age 76, both hemispheres 29.8
2272 Male, age 74, both hemispheres 23.1
2053 Male, age 18, unknown 18.0
Pretectal area
nTPM: 24.7
2667 Female, age 75, unknown 32.4
2407 Male, age 75, both hemispheres 31.8
1944 Female, age 72, unknown 27.2
2825 Male, age 18, unknown 25.4
1815 Male, age 53, unknown 24.9
1816 Male, age 51, unknown 24.9
2007 Male, age 72, unknown 23.6
1817 Female, age 42, unknown 23.0
2224 Female, age 72, unknown 22.3
2273 Male, age 74, both hemispheres 20.7
2316 Male, age 76, right hemisphere 16.1
Red nucleus
nTPM: 28.1
2584 Male, age 75, left hemisphere 36.2
2725 Female, age 75, unknown 34.6
2503 Female, age 72, unknown 34.0
1904 Male, age 53, unknown 29.2
1865 Male, age 51, unknown 29.1
2227 Male, age 72, unknown 26.9
1954 Female, age 42, unknown 25.2
2588 Male, age 74, left hemisphere 25.0
2785 Male, age 18, unknown 24.9
2823 Male, age 76, right hemisphere 24.8
2769 Male, age 72, unknown 24.6
1821 Female, age 72, unknown 22.6
Substantia nigra
nTPM: 24.4
2409 Female, age 72, unknown 30.4
2699 Male, age 18, unknown 29.9
2241 Male, age 72, unknown 28.4
2665 Male, age 74, both hemispheres 26.8
1889 Female, age 72, unknown 23.2
1941 Male, age 53, unknown 23.1
2583 Male, age 75, right hemisphere 22.3
1916 Female, age 42, unknown 21.5
1851 Male, age 51, unknown 20.3
2590 Female, age 75, unknown 17.6
Superior colliculus
nTPM: 25.0
2664 Male, age 75, both hemispheres 33.8
1796 Male, age 53, unknown 31.0
2087 Female, age 72, unknown 24.7
1895 Male, age 76, right hemisphere 24.3
2261 Male, age 18, unknown 24.3
2668 Female, age 75, unknown 24.1
1995 Male, age 72, unknown 22.8
1913 Female, age 42, unknown 22.2
2587 Male, age 74, left hemisphere 21.5
1839 Male, age 51, unknown 21.3
Ventral tegmental area
nTPM: 23.1
1942 Male, age 51, unknown 29.0
2223 Female, age 72, unknown 28.1
2218 Male, age 76, both hemispheres 25.0
1915 Female, age 42, unknown 23.9
2021 Male, age 53, unknown 20.0
2410 Female, age 72, unknown 12.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.5
Samples: 139

Max nTPM: 157.2
Min nTPM: 29.2
Std nTPM: 21.6
Median nTPM: 70.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 157.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 149.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 141.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 140.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 134.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 116.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 115.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 115.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 114.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 113.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 103.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 408.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 408.6
FF:10158-103A5 76 years, female 408.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 133.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 133.2
Samples: 4

Max nTPM: 199.7
Min nTPM: 76.5
Sample A Female 76.5
Sample B Female 130.2
Sample C Male 126.4
Sample D Male 199.7
Midbrain
nTPM: 112.5
Samples: 4

Max nTPM: 130.2
Min nTPM: 91.4
Sample A Female 91.4
Sample B Female 126.2
Sample C Male 102.0
Sample D Male 130.2
Periaqueductal gray
nTPM: 114.9
Samples: 3

Max nTPM: 125.3
Min nTPM: 106.5
Sample B Female 106.5
Sample C Male 112.8
Sample D Male 125.3
Superior colliculi
nTPM: 108.9
Samples: 4

Max nTPM: 137.1
Min nTPM: 83.5
Sample A Female 83.5
Sample B Female 112.0
Sample C Male 102.9
Sample D Male 137.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 43.3
Min nTPM: 37.8
Sample A Male 39.3
Sample B Male 43.3
Sample C Female 38.4
Sample D Female 37.8

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