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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
106.0
nTPM
FANTOM5:
364.1
Scaled Tags Per Million
Pig:
375.5
nTPM
Allen mouse:
10.6
Expression energy
PONS - HPA Brain RNA-seq
Max nTPM
106.0
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 72.6
1984
Male, age 76, both hemispheres
78.1
2188
Female, age 91, both hemispheres
73.0
2090
Male, age 80, both hemispheres
71.4
2301
Female, age 85, both hemispheres
68.1
Dorsal cochlear nucleus nTPM: 78.8
2802
Male, age 74, right hemisphere
86.6
2370
Male, age 61, both hemispheres
78.2
2187
Female, age 91, both hemispheres
77.9
2058
Male, age 76, both hemispheres
76.1
2378
Male, age 80, both hemispheres
75.4
Dorsal tegmental nucleus nTPM: 80.3
2326
Male, age 74, both hemispheres
93.8
1936
Male, age 76, left hemisphere
89.5
2358
Male, age 61, both hemispheres
76.3
2083
Male, age 80, both hemispheres
61.7
Dorsolateral tegmental area nTPM: 72.4
2654
Male, age 80, both hemispheres
89.9
2751
Female, age 85, both hemispheres
80.0
2360
Male, age 74, both hemispheres
70.0
2337
Male, age 61, both hemispheres
63.6
2141
Male, age 76, both hemispheres
58.3
Kolliker-Fuse nucleus nTPM: 70.6
2163
Male, age 80, both hemispheres
93.5
2793
Female, age 91, left hemisphere
61.7
2315
Male, age 76, right hemisphere
56.7
Lateral lemniscal nuclei nTPM: 92.2
2453
Male, age 74, right hemisphere
114.0
2169
Male, age 76, both hemispheres
102.7
2746
Female, age 85, left hemisphere
95.0
2036
Male, age 80, both hemispheres
90.7
2320
Female, age 91, left hemisphere
58.7
Lateral parabrachial nucleus nTPM: 79.5
2790
Male, age 61, both hemispheres
92.3
2013
Male, age 80, both hemispheres
88.0
2139
Female, age 85, right hemisphere
81.3
2792
Male, age 76, both hemispheres
56.6
Lateral vestibular nucleus nTPM: 88.9
2184
Male, age 76, both hemispheres
97.0
2311
Male, age 80, both hemispheres
80.8
Locus coeruleus nTPM: 97.1
2014
Male, age 55, unknown
120.9
1980
Male, age 76, both hemispheres
107.4
2720
Male, age 74, both hemispheres
105.4
2317
Female, age 72, unknown
90.6
2123
Female, age 91, both hemispheres
90.4
2162
Male, age 80, both hemispheres
85.1
2788
Male, age 74, unknown
80.1
Medial parabrachial nucleus nTPM: 81.2
2854
Male, age 80, both hemispheres
89.7
2156
Male, age 61, both hemispheres
89.1
2170
Female, age 91, both hemispheres
87.2
2786
Male, age 76, both hemispheres
76.2
2463
Female, age 85, right hemisphere
63.6
Medial periolivary nuclei nTPM: 95.1
2171
Female, age 85, both hemispheres
118.7
2063
Male, age 76, both hemispheres
114.3
2791
Male, age 74, right hemisphere
103.1
2081
Male, age 80, both hemispheres
73.7
2458
Female, age 91, both hemispheres
65.9
Motor facial nucleus nTPM: 90.3
2062
Male, age 76, both hemispheres
118.3
2365
Male, age 74, right hemisphere
111.7
2327
Male, age 80, both hemispheres
79.2
2795
Female, age 91, both hemispheres
78.9
2697
Female, age 85, both hemispheres
78.7
2126
Male, age 61, both hemispheres
75.1
Motor trigeminal nucleus nTPM: 76.6
2079
Male, age 80, both hemispheres
88.8
2335
Male, age 61, both hemispheres
82.2
2560
Male, age 74, both hemispheres
79.5
2309
Male, age 76, both hemispheres
73.4
2321
Female, age 91, both hemispheres
59.4
Nuclei of the trapezoid body nTPM: 99.8
2735
Female, age 85, both hemispheres
123.9
2159
Male, age 61, both hemispheres
122.1
1983
Male, age 76, both hemispheres
110.7
2166
Male, age 80, both hemispheres
75.1
2368
Female, age 91, both hemispheres
67.2
Nucleus raphe magnus nTPM: 106.0
2160
Male, age 61, both hemispheres
135.3
2172
Female, age 85, both hemispheres
129.1
2455
Male, age 74, both hemispheres
125.8
2051
Male, age 76, both hemispheres
109.8
2328
Male, age 80, both hemispheres
79.7
2459
Female, age 91, both hemispheres
56.5
Paramedian reticular nucleus nTPM: 99.0
2050
Female, age 85, both hemispheres
129.3
2057
Male, age 80, both hemispheres
91.0
2052
Male, age 76, both hemispheres
89.2
2313
Male, age 61, both hemispheres
86.4
Pedunculopontine tegmental nucleus nTPM: 86.6
1921
Female, age 85, both hemispheres
89.5
2334
Male, age 80, both hemispheres
88.9
2338
Male, age 61, both hemispheres
81.4
Pontine nuclei nTPM: 103.5
1863
Male, age 55, unknown
142.0
2727
Male, age 61, right hemisphere
130.5
2787
Female, age 85, both hemispheres
113.3
1968
Male, age 76, left hemisphere
108.5
2109
Female, age 72, unknown
103.6
2454
Male, age 74, left hemisphere
88.7
2319
Female, age 91, both hemispheres
83.4
2115
Male, age 80, left hemisphere
58.1
Pontine raphe nucleus nTPM: 98.4
2122
Female, age 85, midline
114.6
2853
Male, age 76, midline
82.3
Posteroventral cochlear nucleus nTPM: 77.2
2752
Female, age 85, both hemispheres
94.3
2070
Male, age 76, both hemispheres
90.8
2371
Male, age 61, both hemispheres
80.2
2341
Male, age 80, both hemispheres
63.9
2135
Female, age 91, both hemispheres
56.8
Principal sensory trigeminal nucleus nTPM: 93.3
2158
Male, age 61, both hemispheres
111.7
2008
Male, age 80, left hemisphere
105.8
2324
Male, age 76, both hemispheres
80.4
2367
Female, age 91, left hemisphere
75.3
Reticular pontine nucleus, caudal nTPM: 83.4
2332
Male, age 80, right hemisphere
96.2
2457
Female, age 91, both hemispheres
80.0
2559
Male, age 74, both hemispheres
78.7
2092
Male, age 76, both hemispheres
78.6
Reticular pontine nucleus, oral nTPM: 86.3
2012
Female, age 85, both hemispheres
106.5
2361
Male, age 74, both hemispheres
97.9
1939
Male, age 80, both hemispheres
81.3
2366
Female, age 91, both hemispheres
74.3
2167
Male, age 76, both hemispheres
71.4
Reticulotegmental nucleus nTPM: 81.6
2322
Female, age 91, both hemispheres
83.9
2452
Male, age 74, both hemispheres
82.6
2333
Male, age 80, both hemispheres
80.3
2325
Male, age 76, both hemispheres
79.6
Spinal trigeminal nucleus, oral nTPM: 98.4
2164
Male, age 80, both hemispheres
108.0
1978
Male, age 76, both hemispheres
100.8
2737
Female, age 85, both hemispheres
86.4
Subcoeruleus area nTPM: 91.1
1958
Male, age 80, both hemispheres
115.8
2323
Female, age 91, left hemisphere
98.9
2451
Male, age 74, both hemispheres
86.7
2089
Male, age 76, left hemisphere
78.3
2369
Female, age 85, left hemisphere
75.8
Superior olive nTPM: 89.2
1875
Female, age 85, both hemispheres
120.3
2364
Male, age 74, right hemisphere
108.6
2020
Male, age 76, both hemispheres
86.8
2329
Male, age 80, right hemisphere
69.8
2561
Female, age 91, both hemispheres
60.5
Ventral periolivary nuclei nTPM: 88.9
2165
Male, age 80, both hemispheres
111.3
2130
Female, age 85, both hemispheres
96.5
2023
Male, age 76, both hemispheres
76.7
2794
Female, age 91, left hemisphere
71.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 91.3
1959
Male, age 76, both hemispheres
111.7
2449
Male, age 74, both hemispheres
102.4
2161
Male, age 80, both hemispheres
92.0
2840
Female, age 85, both hemispheres
90.0
2359
Male, age 61, both hemispheres
89.7
2456
Female, age 91, both hemispheres
62.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
375.5
Pig sample
Sample description
nTPM
Pons nTPM: 375.5
Samples: 4
Max nTPM: 418.9
Min nTPM: 315.0
Sample A
Female
418.9
Sample B
Female
315.0
Sample C
Male
383.3
Sample D
Male
384.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
