MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:17.5 nTPM
GTEx:15.3 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:25.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
2586 Male, age 75, left hemisphere 20.7
2666 Male, age 74, left hemisphere 18.0
2219 Male, age 76, both hemispheres 17.5
2828 Female, age 72, unknown 16.4
2411 Female, age 72, unknown 16.3
1827 Male, age 72, unknown 15.1
2019 Male, age 18, unknown 14.8
1833 Male, age 53, unknown 14.7
1870 Female, age 42, unknown 14.1
1830 Male, age 51, unknown 13.3
Dorsal raphe nucleus
nTPM: 15.8
2298 Female, age 72, unknown 18.0
2047 Male, age 72, unknown 16.9
2750 Male, age 76, both hemispheres 16.5
1828 Male, age 53, unknown 14.1
2016 Female, age 72, unknown 13.3
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 14.4
2849 Male, age 72, unknown 13.6
1890 Male, age 53, unknown 13.4
1848 Female, age 42, unknown 12.2
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 16.6
2502 Female, age 75, unknown 18.1
1795 Male, age 51, unknown 17.4
1947 Male, age 18, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 12.9
1840 Male, age 53, unknown 13.9
1831 Male, age 72, unknown 12.7
2464 Female, age 72, unknown 12.5
2850 Male, age 76, both hemispheres 12.5
Periaquaductal grey, lateral
nTPM: 11.8
2053 Male, age 18, unknown 11.9
2140 Male, age 76, both hemispheres 11.9
2272 Male, age 74, both hemispheres 11.7
Pretectal area
nTPM: 15.2
1817 Female, age 42, unknown 17.8
2007 Male, age 72, unknown 17.8
1944 Female, age 72, unknown 17.5
1816 Male, age 51, unknown 16.4
2667 Female, age 75, unknown 16.1
1815 Male, age 53, unknown 15.4
2407 Male, age 75, both hemispheres 14.5
2224 Female, age 72, unknown 13.5
2825 Male, age 18, unknown 13.5
2316 Male, age 76, right hemisphere 12.4
2273 Male, age 74, both hemispheres 12.2
Red nucleus
nTPM: 14.2
2584 Male, age 75, left hemisphere 18.4
2785 Male, age 18, unknown 17.5
1904 Male, age 53, unknown 15.0
1865 Male, age 51, unknown 14.5
2227 Male, age 72, unknown 14.5
2769 Male, age 72, unknown 14.5
2588 Male, age 74, left hemisphere 13.6
1821 Female, age 72, unknown 13.5
2725 Female, age 75, unknown 12.5
1954 Female, age 42, unknown 12.4
2823 Male, age 76, right hemisphere 11.9
2503 Female, age 72, unknown 11.6
Substantia nigra
nTPM: 17.5
1916 Female, age 42, unknown 26.5
1851 Male, age 51, unknown 21.4
2583 Male, age 75, right hemisphere 18.1
2699 Male, age 18, unknown 17.6
1941 Male, age 53, unknown 16.6
2665 Male, age 74, both hemispheres 16.1
1889 Female, age 72, unknown 15.3
2590 Female, age 75, unknown 14.7
2409 Female, age 72, unknown 14.5
2241 Male, age 72, unknown 13.9
Superior colliculus
nTPM: 15.0
1796 Male, age 53, unknown 17.3
2668 Female, age 75, unknown 16.6
2087 Female, age 72, unknown 16.2
2261 Male, age 18, unknown 16.2
2664 Male, age 75, both hemispheres 15.9
1913 Female, age 42, unknown 14.5
1995 Male, age 72, unknown 14.3
1839 Male, age 51, unknown 13.7
2587 Male, age 74, left hemisphere 13.3
1895 Male, age 76, right hemisphere 12.2
Ventral tegmental area
nTPM: 16.6
2218 Male, age 76, both hemispheres 18.4
1915 Female, age 42, unknown 18.1
2410 Female, age 72, unknown 18.0
2223 Female, age 72, unknown 15.5
2021 Male, age 53, unknown 15.1
1942 Male, age 51, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 28.0
Min nTPM: 9.3
Std nTPM: 3.1
Median nTPM: 14.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 28.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 22.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 22.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 21.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 20.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 20.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 19.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.6
Samples: 4

Max nTPM: 24.0
Min nTPM: 16.9
Sample A Female 24.0
Sample B Female 17.3
Sample C Male 20.3
Sample D Male 16.9
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 29.4
Min nTPM: 17.0
Sample A Female 29.4
Sample B Female 17.0
Sample C Male 18.7
Sample D Male 17.8
Periaqueductal gray
nTPM: 15.5
Samples: 3

Max nTPM: 16.8
Min nTPM: 14.6
Sample B Female 14.6
Sample C Male 16.8
Sample D Male 15.2
Superior colliculi
nTPM: 19.4
Samples: 4

Max nTPM: 22.4
Min nTPM: 16.1
Sample A Female 22.4
Sample B Female 16.1
Sample C Male 20.9
Sample D Male 18.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 24.7
Sample A Male 27.7
Sample B Male 25.5
Sample C Female 24.7
Sample D Female 24.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
79568055 Antisense, RP_071204_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0
80526202 Antisense, RP_071204_02_C08, Mouse strain C57BL/6J (56 days, male) 0.0

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