MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:232.7 nTPM
HPA Brain:397.2 nTPM
GTEx:232.7 nTPM
FANTOM5:118.8 Scaled Tags Per Million
Pig:470.5 nTPM
Mouse:183.6 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 397.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 293.8
2666 Male, age 74, left hemisphere 431.1
2219 Male, age 76, both hemispheres 373.7
2586 Male, age 75, left hemisphere 317.4
1827 Male, age 72, unknown 315.7
1870 Female, age 42, unknown 284.9
2411 Female, age 72, unknown 280.3
1833 Male, age 53, unknown 254.0
2828 Female, age 72, unknown 243.2
2019 Male, age 18, unknown 221.0
1830 Male, age 51, unknown 217.1
Dorsal raphe nucleus
nTPM: 293.7
2298 Female, age 72, unknown 344.5
2047 Male, age 72, unknown 340.0
1828 Male, age 53, unknown 295.0
2750 Male, age 76, both hemispheres 270.0
2016 Female, age 72, unknown 219.2
Inferior colliculus
nTPM: 249.8
2849 Male, age 72, unknown 274.7
1848 Female, age 42, unknown 252.6
2097 Female, age 72, unknown 240.4
1890 Male, age 53, unknown 231.2
Median raphe nucleus
nTPM: 382.2
2220 Male, age 76, midline 382.2
Periaquaductal grey, anterior
nTPM: 294.0
1947 Male, age 18, unknown 317.7
1795 Male, age 51, unknown 317.1
2502 Female, age 75, unknown 247.3
Periaquaductal grey, dorsal
nTPM: 242.1
1840 Male, age 53, unknown 303.9
2850 Male, age 76, both hemispheres 243.0
1831 Male, age 72, unknown 234.5
2464 Female, age 72, unknown 186.8
Periaquaductal grey, lateral
nTPM: 213.7
2053 Male, age 18, unknown 225.2
2272 Male, age 74, both hemispheres 210.1
2140 Male, age 76, both hemispheres 205.8
Pretectal area
nTPM: 286.4
2007 Male, age 72, unknown 367.5
1816 Male, age 51, unknown 341.9
1944 Female, age 72, unknown 330.4
1817 Female, age 42, unknown 330.1
2224 Female, age 72, unknown 317.7
1815 Male, age 53, unknown 302.0
2667 Female, age 75, unknown 297.1
2825 Male, age 18, unknown 279.0
2407 Male, age 75, both hemispheres 236.9
2316 Male, age 76, right hemisphere 181.5
2273 Male, age 74, both hemispheres 166.1
Red nucleus
nTPM: 212.9
2584 Male, age 75, left hemisphere 368.7
1821 Female, age 72, unknown 231.5
2785 Male, age 18, unknown 230.8
2725 Female, age 75, unknown 230.2
2588 Male, age 74, left hemisphere 217.6
2769 Male, age 72, unknown 194.1
1954 Female, age 42, unknown 188.2
2227 Male, age 72, unknown 187.8
1904 Male, age 53, unknown 182.6
2503 Female, age 72, unknown 178.4
2823 Male, age 76, right hemisphere 176.4
1865 Male, age 51, unknown 168.3
Substantia nigra
nTPM: 397.2
1916 Female, age 42, unknown 663.4
1851 Male, age 51, unknown 480.8
2665 Male, age 74, both hemispheres 444.9
1941 Male, age 53, unknown 408.6
2241 Male, age 72, unknown 376.4
2699 Male, age 18, unknown 374.2
1889 Female, age 72, unknown 352.2
2409 Female, age 72, unknown 327.8
2583 Male, age 75, right hemisphere 311.5
2590 Female, age 75, unknown 232.6
Superior colliculus
nTPM: 260.9
2668 Female, age 75, unknown 417.2
1796 Male, age 53, unknown 319.4
2261 Male, age 18, unknown 264.3
2664 Male, age 75, both hemispheres 263.9
2087 Female, age 72, unknown 255.6
1839 Male, age 51, unknown 255.0
1895 Male, age 76, right hemisphere 247.2
2587 Male, age 74, left hemisphere 232.7
1913 Female, age 42, unknown 187.5
1995 Male, age 72, unknown 165.8
Ventral tegmental area
nTPM: 383.0
1915 Female, age 42, unknown 484.5
2218 Male, age 76, both hemispheres 477.6
2410 Female, age 72, unknown 401.7
1942 Male, age 51, unknown 363.2
2223 Female, age 72, unknown 296.4
2021 Male, age 53, unknown 274.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 232.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 232.7
Samples: 139

Max nTPM: 695.9
Min nTPM: 76.3
Std nTPM: 141.2
Median nTPM: 189.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 695.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 652.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 648.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 643.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 570.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 556.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 551.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 548.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 541.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 507.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 505.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.8
FF:10158-103A5 76 years, female 118.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 470.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 434.8
Samples: 4

Max nTPM: 641.8
Min nTPM: 181.4
Sample A Female 596.7
Sample B Female 319.4
Sample C Male 641.8
Sample D Male 181.4
Midbrain
nTPM: 446.2
Samples: 4

Max nTPM: 629.8
Min nTPM: 222.8
Sample A Female 222.8
Sample B Female 332.5
Sample C Male 629.8
Sample D Male 599.6
Periaqueductal gray
nTPM: 390.1
Samples: 3

Max nTPM: 529.2
Min nTPM: 308.3
Sample B Female 308.3
Sample C Male 529.2
Sample D Male 332.9
Superior colliculi
nTPM: 470.5
Samples: 4

Max nTPM: 576.8
Min nTPM: 271.1
Sample A Female 576.8
Sample B Female 271.1
Sample C Male 493.3
Sample D Male 540.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 183.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 183.6
Samples: 4

Max nTPM: 188.5
Min nTPM: 179.0
Sample A Male 188.5
Sample B Male 180.7
Sample C Female 179.0
Sample D Female 186.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
77464848 Antisense, RP_070129_02_B12, Mouse strain C57BL/6J (56 days, male) 16.9
808 Antisense, RP_Baylor_102968, Mouse strain C57BL/6J (56 days, male) 1.5
809 Antisense, RP_Baylor_102968, Mouse strain C57BL/6J (56 days, male) 1.2
810 Sense, RPS_Baylor_37025, Mouse strain C57BL/6J (56 days, male) 0.0

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