MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:6.4 nTPM
GTEx:4.0 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:0.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 6.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.9
2666 Male, age 74, left hemisphere 8.6
2019 Male, age 18, unknown 6.8
2219 Male, age 76, both hemispheres 6.3
2828 Female, age 72, unknown 6.3
1830 Male, age 51, unknown 6.2
2411 Female, age 72, unknown 6.0
2586 Male, age 75, left hemisphere 5.5
1870 Female, age 42, unknown 5.0
1833 Male, age 53, unknown 4.4
1827 Male, age 72, unknown 4.0
Dorsal raphe nucleus
nTPM: 5.2
2047 Male, age 72, unknown 5.8
2298 Female, age 72, unknown 5.6
1828 Male, age 53, unknown 5.1
2750 Male, age 76, both hemispheres 4.9
2016 Female, age 72, unknown 4.4
Inferior colliculus
nTPM: 5.0
2097 Female, age 72, unknown 5.4
1890 Male, age 53, unknown 5.1
1848 Female, age 42, unknown 4.9
2849 Male, age 72, unknown 4.4
Median raphe nucleus
nTPM: 3.7
2220 Male, age 76, midline 3.7
Periaquaductal grey, anterior
nTPM: 4.8
2502 Female, age 75, unknown 5.3
1795 Male, age 51, unknown 4.6
1947 Male, age 18, unknown 4.6
Periaquaductal grey, dorsal
nTPM: 4.0
2464 Female, age 72, unknown 5.4
1831 Male, age 72, unknown 4.3
1840 Male, age 53, unknown 3.4
2850 Male, age 76, both hemispheres 3.1
Periaquaductal grey, lateral
nTPM: 3.5
2053 Male, age 18, unknown 4.2
2140 Male, age 76, both hemispheres 3.6
2272 Male, age 74, both hemispheres 2.7
Pretectal area
nTPM: 4.6
2316 Male, age 76, right hemisphere 7.4
2007 Male, age 72, unknown 7.2
1817 Female, age 42, unknown 5.7
1816 Male, age 51, unknown 4.5
2667 Female, age 75, unknown 4.3
1944 Female, age 72, unknown 4.2
1815 Male, age 53, unknown 4.0
2825 Male, age 18, unknown 3.8
2224 Female, age 72, unknown 3.7
2407 Male, age 75, both hemispheres 3.2
2273 Male, age 74, both hemispheres 2.4
Red nucleus
nTPM: 6.4
2588 Male, age 74, left hemisphere 9.1
2769 Male, age 72, unknown 8.0
1904 Male, age 53, unknown 7.1
1954 Female, age 42, unknown 6.9
1821 Female, age 72, unknown 6.2
2227 Male, age 72, unknown 6.2
2503 Female, age 72, unknown 6.1
2785 Male, age 18, unknown 6.1
1865 Male, age 51, unknown 5.6
2584 Male, age 75, left hemisphere 5.4
2823 Male, age 76, right hemisphere 5.4
2725 Female, age 75, unknown 5.2
Substantia nigra
nTPM: 5.2
2665 Male, age 74, both hemispheres 9.0
1941 Male, age 53, unknown 6.0
1851 Male, age 51, unknown 5.6
2583 Male, age 75, right hemisphere 5.3
2699 Male, age 18, unknown 5.2
1916 Female, age 42, unknown 5.0
1889 Female, age 72, unknown 4.6
2241 Male, age 72, unknown 4.1
2590 Female, age 75, unknown 4.0
2409 Female, age 72, unknown 3.7
Superior colliculus
nTPM: 5.0
2668 Female, age 75, unknown 7.2
2664 Male, age 75, both hemispheres 6.2
1796 Male, age 53, unknown 5.5
2087 Female, age 72, unknown 5.2
2587 Male, age 74, left hemisphere 5.0
1839 Male, age 51, unknown 4.6
2261 Male, age 18, unknown 4.4
1895 Male, age 76, right hemisphere 4.1
1913 Female, age 42, unknown 3.9
1995 Male, age 72, unknown 3.8
Ventral tegmental area
nTPM: 4.8
2021 Male, age 53, unknown 5.2
1942 Male, age 51, unknown 5.1
2410 Female, age 72, unknown 5.1
2223 Female, age 72, unknown 4.7
1915 Female, age 42, unknown 4.3
2218 Male, age 76, both hemispheres 4.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 13.8
Min nTPM: 1.1
Std nTPM: 2.4
Median nTPM: 3.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 13.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 13.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 11.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 11.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 9.8
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 9.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 8.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 7.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 7.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 7.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.1
FF:10158-103A5 76 years, female 67.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 110.3
Min nTPM: 1.4
Sample A Female 11.7
Sample B Female 110.3
Sample C Male 5.8
Sample D Male 1.4
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.9
Sample A Female 1.3
Sample B Female 1.0
Sample C Male 0.9
Sample D Male 1.3
Periaqueductal gray
nTPM: 1.1
Samples: 3

Max nTPM: 1.4
Min nTPM: 0.9
Sample B Female 0.9
Sample C Male 1.4
Sample D Male 1.0
Superior colliculi
nTPM: 4.8
Samples: 4

Max nTPM: 15.3
Min nTPM: 0.8
Sample A Female 15.3
Sample B Female 1.8
Sample C Male 0.8
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.1
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71210846 Antisense, RP_050810_04_F09, Mouse strain C57BL/6J (56 days, male) 0.2

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