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                                  • EBI3
                                  TISSUE PRIMARY DATA KIDNEY Show tissue menu
                                  ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
                                  ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
                                  ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
                                  SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Dictionary
                                  Kidney
                                  Tissue proteome
                                  Kidney
                                  KIDNEY - Expression summary
                                  Protein expression
                                  Kidneyi

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  h
                                  m
                                  l
                                  n
                                  Cells in glomeruli: Not detected
                                  Cells in tubules: Not detected
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  Consensus:2.0 nTPM
                                  HPA:0.5 nTPM
                                  GTEx:2.0 nTPM
                                  FANTOM5:12.8 Scaled Tags Per Million

                                  KIDNEY - Antibody stainingi

                                  Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

                                  Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

                                  Antibody HPA046635
                                  Cells in glomeruli Not detected
                                  Cells in tubules Low



                                  KIDNEY - HPA RNA-seqi

                                  The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

                                  Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
                                  Average nTPM 0.5
                                  overview
                                  Female, age 58
                                  Kidney sample 55
                                  nTPM: 0.8
                                  Cell types%
                                  Cells in tubules:
                                  60

                                  Cells in glomeruli:
                                  20

                                  Fibroblasts:
                                  5

                                  Other cell types:
                                  15

                                  overview
                                  Female, age 67
                                  Kidney sample 56
                                  nTPM: 1.3
                                  Cell types%
                                  Cells in tubules:
                                  70

                                  Cells in glomeruli:
                                  15

                                  Fibroblasts:
                                  10

                                  Other cell types:
                                  5

                                  overview
                                  Female, age 55
                                  Kidney sample 57
                                  nTPM: 1.2
                                  Cell types%
                                  Cells in tubules:
                                  80

                                  Cells in glomeruli:
                                  10

                                  Fibroblasts:
                                  5

                                  Other cell types:
                                  5

                                  overview
                                  Male, age 46
                                  Kidney sample 58
                                  nTPM: 0.7
                                  Cell types%
                                  Cells in tubules:
                                  60

                                  Cells in glomeruli:
                                  25

                                  Fibroblasts:
                                  5

                                  Other cell types:
                                  10

                                  overview
                                  Female, age 57
                                  Kidney sample 358
                                  nTPM: 0
                                  Cell types%
                                  Cells in tubules:
                                  60

                                  Cells in glomeruli:
                                  10

                                  Fibroblasts:
                                  10

                                  Other cell types:
                                  20

                                  overview
                                  Male, age 78
                                  Kidney sample 377
                                  nTPM: 0.3
                                  Cell types%
                                  Cells in tubules:
                                  65

                                  Cells in glomeruli:
                                  10

                                  Fibroblasts:
                                  5

                                  Other cell types:
                                  20

                                  overview
                                  Male, age 73
                                  Kidney sample 380
                                  nTPM: 0.2
                                  Cell types%
                                  Cells in tubules:
                                  60

                                  Cells in glomeruli:
                                  10

                                  Fibroblasts:
                                  10

                                  Other cell types:
                                  20

                                  overview
                                  Female, age 59
                                  Kidney sample 394
                                  nTPM: 0.2
                                  Cell types%
                                  Cells in tubules:
                                  65

                                  Cells in glomeruli:
                                  10

                                  Fibroblasts:
                                  10

                                  Other cell types:
                                  15

                                  overview
                                  Female, age 48
                                  Kidney sample 414
                                  nTPM: 0.2
                                  Cell types%
                                  Cells in tubules:
                                  60

                                  Cells in glomeruli:
                                  5

                                  Fibroblasts:
                                  10

                                  Other cell types:
                                  25


                                  KIDNEY - GTEx RNA-seqi

                                  RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                  Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 2.0
                                  GTEx sample id Sample description nTPM
                                  0.61.12.20.04.401234567891011
                                  0.61.12.20.04.401234567891011
                                  Kidney - Cortex
                                  Average nTPM: 2.0
                                  Samples: 85

                                  Max nTPM: 11.8
                                  Min nTPM: 0.0
                                  Std nTPM: 2.5
                                  Median nTPM: 1.1
                                  GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 11.8
                                  GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 11.0
                                  GTEX-1399S-0526-SM-5IJG8 30-39 years, female 9.9
                                  GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 9.0
                                  GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 8.4
                                  GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 7.9
                                  GTEX-QDVN-1626-SM-48TZC 50-59 years, male 6.9
                                  GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 5.8
                                  GTEX-145MN-0326-SM-5QGQI 30-39 years, male 5.2
                                  GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 4.7
                                  GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 4.4
                                  GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 4.1
                                  GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 3.7
                                  GTEX-RN64-1626-SM-48FD7 50-59 years, male 3.2
                                  GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 2.9
                                  GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 2.9
                                  GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 2.8
                                  GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 2.8
                                  GTEX-XPVG-0526-SM-4B65N 50-59 years, male 2.6
                                  GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 2.4
                                  GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 2.3
                                  GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 2.2
                                  GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 2.2
                                  GTEX-12696-0926-SM-5FQTV 60-69 years, male 2.1
                                  GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 2.1
                                  GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 2.0
                                  GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 2.0
                                  GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 2.0
                                  GTEX-13112-2126-SM-5GCO4 50-59 years, male 1.9
                                  GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 1.7
                                  GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1.7
                                  GTEX-O5YV-1226-SM-EV795 60-69 years, female 1.7
                                  GTEX-17F97-1926-SM-7IGM4 50-59 years, male 1.6
                                  GTEX-14C39-2126-SM-664OH 40-49 years, male 1.5
                                  GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 1.4
                                  GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1.4
                                  GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 1.2
                                  GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 1.2
                                  GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 1.2
                                  GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 1.1
                                  GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1.1
                                  GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 1.1
                                  GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 1.1
                                  GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 1.0
                                  GTEX-17F96-1926-SM-7MGWY 70-79 years, male 1.0
                                  GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 1.0
                                  GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 1.0
                                  GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 1.0
                                  GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 0.9
                                  GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 0.9
                                  GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 0.8
                                  GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 0.8
                                  GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 0.8
                                  GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 0.8
                                  GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 0.7
                                  GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 0.7
                                  GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 0.7
                                  GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 0.7
                                  GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 0.7
                                  GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 0.7
                                  GTEX-REY6-1826-SM-EAZAT 60-69 years, male 0.7
                                  GTEX-15CHQ-2126-SM-6871M 60-69 years, male 0.6
                                  GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 0.6
                                  GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 0.6
                                  GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 0.6
                                  GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 0.6
                                  GTEX-1BAJH-1826-SM-731DA 70-79 years, male 0.5
                                  GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 0.5
                                  GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 0.5
                                  GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 0.4
                                  GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 0.4
                                  GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 0.4
                                  GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 0.4
                                  GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 0.4
                                  GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 0.4
                                  GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 0.3
                                  GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 0.3
                                  GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 0.3
                                  GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 0.2
                                  GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 0.2
                                  GTEX-T5JC-1526-SM-4DM68 20-29 years, male 0.2
                                  GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 0.1
                                  GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 0.1
                                  GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 0.1
                                  GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 0.0
                                  Show allShow less
                                  1.51.92.10.82.60.00.20.40.60.81.01.21.41.61.82.02.22.42.6
                                  1.51.92.10.82.60.00.20.40.60.81.01.21.41.61.82.02.22.42.6
                                  Kidney - Medulla
                                  Average nTPM: 1.8
                                  Samples: 4

                                  Max nTPM: 2.6
                                  Min nTPM: 0.8
                                  Std nTPM: 0.6
                                  Median nTPM: 1.9
                                  GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 2.6
                                  GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 2.0
                                  GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 1.7
                                  GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 0.8

                                  KIDNEY - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 12.8
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Kidney
                                  Scaled Tags Per Million: 12.8
                                  FF:10017-101C8 60,62,63 years, female 12.8

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