MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:333.1 nTPM
HPA Brain:210.0 nTPM
GTEx:333.1 nTPM
FANTOM5:213.1 Scaled Tags Per Million
Pig:119.3 nTPM
Mouse:62.2 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 210.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.9
2411 Female, age 72, unknown 207.4
2019 Male, age 18, unknown 196.0
1827 Male, age 72, unknown 188.9
1833 Male, age 53, unknown 184.0
1870 Female, age 42, unknown 182.5
1830 Male, age 51, unknown 179.2
2828 Female, age 72, unknown 166.9
2219 Male, age 76, both hemispheres 156.4
2666 Male, age 74, left hemisphere 143.3
2586 Male, age 75, left hemisphere 124.3
Dorsal raphe nucleus
nTPM: 173.0
2750 Male, age 76, both hemispheres 229.2
2298 Female, age 72, unknown 176.0
2047 Male, age 72, unknown 168.7
1828 Male, age 53, unknown 151.3
2016 Female, age 72, unknown 139.9
Inferior colliculus
nTPM: 134.1
2849 Male, age 72, unknown 138.2
2097 Female, age 72, unknown 137.8
1890 Male, age 53, unknown 131.7
1848 Female, age 42, unknown 128.8
Median raphe nucleus
nTPM: 210.0
2220 Male, age 76, midline 210.0
Periaquaductal grey, anterior
nTPM: 149.3
2502 Female, age 75, unknown 159.7
1795 Male, age 51, unknown 144.9
1947 Male, age 18, unknown 143.2
Periaquaductal grey, dorsal
nTPM: 134.8
2850 Male, age 76, both hemispheres 160.0
1831 Male, age 72, unknown 133.2
2464 Female, age 72, unknown 131.1
1840 Male, age 53, unknown 114.9
Periaquaductal grey, lateral
nTPM: 146.3
2272 Male, age 74, both hemispheres 168.8
2053 Male, age 18, unknown 138.2
2140 Male, age 76, both hemispheres 131.7
Pretectal area
nTPM: 176.1
1817 Female, age 42, unknown 211.6
1815 Male, age 53, unknown 208.3
2007 Male, age 72, unknown 204.5
1944 Female, age 72, unknown 184.4
1816 Male, age 51, unknown 176.0
2273 Male, age 74, both hemispheres 174.7
2224 Female, age 72, unknown 163.4
2407 Male, age 75, both hemispheres 160.5
2825 Male, age 18, unknown 153.9
2667 Female, age 75, unknown 152.8
2316 Male, age 76, right hemisphere 146.5
Red nucleus
nTPM: 177.1
1821 Female, age 72, unknown 204.0
2785 Male, age 18, unknown 201.5
1865 Male, age 51, unknown 195.1
1904 Male, age 53, unknown 182.3
2823 Male, age 76, right hemisphere 181.7
2503 Female, age 72, unknown 178.3
2725 Female, age 75, unknown 175.4
1954 Female, age 42, unknown 168.7
2769 Male, age 72, unknown 165.1
2227 Male, age 72, unknown 163.2
2584 Male, age 75, left hemisphere 157.2
2588 Male, age 74, left hemisphere 152.6
Substantia nigra
nTPM: 172.3
1889 Female, age 72, unknown 209.9
1916 Female, age 42, unknown 200.4
1941 Male, age 53, unknown 198.2
1851 Male, age 51, unknown 191.1
2699 Male, age 18, unknown 182.0
2590 Female, age 75, unknown 166.6
2583 Male, age 75, right hemisphere 153.7
2409 Female, age 72, unknown 142.8
2241 Male, age 72, unknown 142.7
2665 Male, age 74, both hemispheres 135.6
Superior colliculus
nTPM: 160.7
2587 Male, age 74, left hemisphere 202.7
1913 Female, age 42, unknown 189.6
2668 Female, age 75, unknown 174.5
1995 Male, age 72, unknown 166.8
1796 Male, age 53, unknown 160.5
1895 Male, age 76, right hemisphere 156.2
1839 Male, age 51, unknown 150.9
2087 Female, age 72, unknown 147.9
2261 Male, age 18, unknown 141.1
2664 Male, age 75, both hemispheres 116.4
Ventral tegmental area
nTPM: 182.3
2410 Female, age 72, unknown 206.7
2218 Male, age 76, both hemispheres 203.2
2223 Female, age 72, unknown 191.1
1915 Female, age 42, unknown 188.0
2021 Male, age 53, unknown 155.2
1942 Male, age 51, unknown 149.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 333.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 333.1
Samples: 139

Max nTPM: 666.1
Min nTPM: 160.5
Std nTPM: 80.9
Median nTPM: 329.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 666.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 649.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 575.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 518.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 508.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 497.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 495.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 481.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 478.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 456.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 444.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.1
FF:10158-103A5 76 years, female 213.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 119.3
Samples: 4

Max nTPM: 166.4
Min nTPM: 90.3
Sample A Female 166.4
Sample B Female 97.1
Sample C Male 123.4
Sample D Male 90.3
Midbrain
nTPM: 117.7
Samples: 4

Max nTPM: 158.9
Min nTPM: 96.3
Sample A Female 158.9
Sample B Female 118.5
Sample C Male 97.0
Sample D Male 96.3
Periaqueductal gray
nTPM: 109.4
Samples: 3

Max nTPM: 130.2
Min nTPM: 98.0
Sample B Female 98.0
Sample C Male 130.2
Sample D Male 99.9
Superior colliculi
nTPM: 106.1
Samples: 4

Max nTPM: 132.2
Min nTPM: 85.8
Sample A Female 132.2
Sample B Female 85.8
Sample C Male 100.5
Sample D Male 106.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.3
Samples: 4

Max nTPM: 67.7
Min nTPM: 54.4
Sample A Male 67.7
Sample B Male 61.8
Sample C Female 54.4
Sample D Female 65.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
512765 Antisense, RP_040809_02_D03, Mouse strain C57BL/6J (56 days, male) 7.5
71764910 Antisense, RP_050926_02_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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