HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:288.3 nTPM
HPA Brain:157.6 nTPM
GTEx:288.3 nTPM
FANTOM5:129.6 Scaled Tags Per Million
Pig:84.5 nTPM
Mouse:71.8 nTPM
Allen mouse:6.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041428Antibody HPA041722
Glial cells LowLow
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 157.6
Sample id Sample description nTPM
Hippocampus
nTPM: 140.1
1898 Male, age 80, left hemisphere 152.8
2529 Female, age 94, left hemisphere 152.3
1855 Male, age 76, left hemisphere 149.6
2621 Female, age 67, right hemisphere 142.0
1911 Female, age 85, right hemisphere 127.7
2148 Female, age 91, left hemisphere 116.3
Dentate gyrus
nTPM: 136.6
2530 Female, age 94, left hemisphere 169.8
2010 Male, age 76, both hemispheres 144.4
2246 Female, age 85, both hemispheres 135.5
1927 Female, age 91, both hemispheres 132.6
2528 Male, age 74, both hemispheres 131.4
2531 Female, age 67, both hemispheres 105.7
Entorhinal gyrus
nTPM: 154.1
2764 Male, age 80, right hemisphere 174.1
1938 Female, age 85, left hemisphere 172.3
2117 Female, age 91, right hemisphere 157.0
1787 Male, age 76, left hemisphere 156.8
2613 Female, age 94, left hemisphere 142.5
2686 Male, age 75, right hemisphere 121.7
Hippocampus, CA1
nTPM: 134.5
2749 Male, age 80, left hemisphere 175.8
2527 Male, age 74, both hemispheres 131.9
1873 Female, age 85, both hemispheres 129.1
2045 Male, age 76, both hemispheres 123.5
2082 Female, age 91, right hemisphere 112.4
Hippocampus, CA2
nTPM: 138.5
2249 Male, age 74, both hemispheres 159.5
1963 Male, age 80, left hemisphere 151.9
1892 Male, age 76, both hemispheres 139.5
2437 Female, age 94, left hemisphere 134.8
1940 Female, age 85, left hemisphere 133.5
2113 Female, age 91, right hemisphere 112.0
Hippocampus, CA3
nTPM: 118.5
1891 Female, age 85, both hemispheres 140.4
1867 Male, age 76, both hemispheres 134.4
2436 Male, age 74, both hemispheres 130.2
2137 Male, age 80, left hemisphere 119.2
2620 Female, age 94, left hemisphere 99.4
2861 Female, age 67, both hemispheres 87.3
Parahippocampal cortex
nTPM: 142.1
1850 Male, age 80, both hemispheres 168.4
1933 Female, age 85, both hemispheres 167.4
2532 Female, age 72, left hemisphere 161.3
1990 Female, age 91, right hemisphere 147.9
2245 Female, age 91, both hemispheres 143.9
2250 Female, age 67, right hemisphere 141.7
2692 Male, age 74, both hemispheres 133.0
2018 Male, age 76, both hemispheres 132.8
2693 Female, age 94, both hemispheres 130.6
2622 Female, age 67, right hemisphere 93.5
Perirhinal gyrus
nTPM: 157.6
1794 Male, age 80, right hemisphere 172.4
1847 Female, age 91, left hemisphere 162.1
1841 Female, age 85, right hemisphere 157.1
2848 Male, age 76, right hemisphere 149.8
2521 Female, age 94, right hemisphere 146.8
Subiculum
nTPM: 152.7
1977 Female, age 85, both hemispheres 179.0
2042 Male, age 76, both hemispheres 165.7
1901 Male, age 80, both hemispheres 154.1
2438 Female, age 94, left hemisphere 147.8
2619 Male, age 74, both hemispheres 145.7
2729 Female, age 91, right hemisphere 123.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 288.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 288.3
Samples: 197

Max nTPM: 549.0
Min nTPM: 135.7
Std nTPM: 67.2
Median nTPM: 279.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 549.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 546.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 459.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 452.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 452.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 451.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 448.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 419.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 408.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 399.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 399.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 129.6
FF:10169-103B7 60 years, female 133.9
FF:10153-102I9 76 years, female 125.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 84.5
Pig sample Sample description nTPM
Subiculum
nTPM: 83.5
Samples: 4

Max nTPM: 108.4
Min nTPM: 71.5
Sample A Female 108.4
Sample B Female 77.4
Sample C Male 76.7
Sample D Male 71.5
Dorsal hippocampus
nTPM: 84.5
Samples: 4

Max nTPM: 110.6
Min nTPM: 53.8
Sample A Female 110.6
Sample B Female 79.0
Sample C Male 94.6
Sample D Male 53.8
Entorhinal cortex
nTPM: 75.0
Samples: 4

Max nTPM: 81.5
Min nTPM: 61.6
Sample A Female 81.5
Sample B Female 78.7
Sample C Male 78.3
Sample D Male 61.6
Ventral hippocampus
nTPM: 82.1
Samples: 4

Max nTPM: 97.4
Min nTPM: 61.8
Sample A Female 88.2
Sample B Female 61.8
Sample C Male 97.4
Sample D Male 81.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 71.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 71.9
Samples: 4

Max nTPM: 75.2
Min nTPM: 66.6
Sample A Male 66.6
Sample B Male 75.2
Sample C Female 70.8
Sample D Female 74.9
Hippocampal formation
nTPM: 67.7
Samples: 4

Max nTPM: 70.6
Min nTPM: 62.8
Sample A Male 70.4
Sample B Male 62.8
Sample C Female 67.0
Sample D Female 70.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.0
512765 Antisense, RP_040809_02_D03, Mouse strain C57BL/6J (56 days, male) 11.8
71764910 Antisense, RP_050926_02_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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