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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
138.3
nTPM
HPA Brain:
310.1
nTPM
GTEx:
138.3
nTPM
FANTOM5:
322.2
Scaled Tags Per Million
Pig:
230.2
nTPM
Mouse:
327.8
nTPM
HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA079430
Glial cells
High
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
310.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 245.6
2621
Female, age 67, right hemisphere
293.3
1855
Male, age 76, left hemisphere
292.8
1898
Male, age 80, left hemisphere
260.7
2529
Female, age 94, left hemisphere
218.0
2148
Female, age 91, left hemisphere
213.4
1911
Female, age 85, right hemisphere
195.1
Dentate gyrus nTPM: 241.5
2530
Female, age 94, left hemisphere
301.4
2010
Male, age 76, both hemispheres
261.4
2246
Female, age 85, both hemispheres
250.4
1927
Female, age 91, both hemispheres
237.7
2531
Female, age 67, both hemispheres
216.8
2528
Male, age 74, both hemispheres
181.4
Entorhinal gyrus nTPM: 301.1
2613
Female, age 94, left hemisphere
412.0
2764
Male, age 80, right hemisphere
332.9
1938
Female, age 85, left hemisphere
291.9
2686
Male, age 75, right hemisphere
283.5
1787
Male, age 76, left hemisphere
271.0
2117
Female, age 91, right hemisphere
215.7
Hippocampus, CA1 nTPM: 250.0
2749
Male, age 80, left hemisphere
349.1
1873
Female, age 85, both hemispheres
246.7
2045
Male, age 76, both hemispheres
235.4
2527
Male, age 74, both hemispheres
212.2
2082
Female, age 91, right hemisphere
206.8
Hippocampus, CA2 nTPM: 244.6
1892
Male, age 76, both hemispheres
347.8
2437
Female, age 94, left hemisphere
272.0
1963
Male, age 80, left hemisphere
257.2
1940
Female, age 85, left hemisphere
217.8
2113
Female, age 91, right hemisphere
206.2
2249
Male, age 74, both hemispheres
166.5
Hippocampus, CA3 nTPM: 242.0
2861
Female, age 67, both hemispheres
285.3
2137
Male, age 80, left hemisphere
283.6
2620
Female, age 94, left hemisphere
264.7
1867
Male, age 76, both hemispheres
254.6
1891
Female, age 85, both hemispheres
195.2
2436
Male, age 74, both hemispheres
168.7
Parahippocampal cortex nTPM: 293.7
2245
Female, age 91, both hemispheres
359.2
2532
Female, age 72, left hemisphere
343.8
1850
Male, age 80, both hemispheres
324.9
2622
Female, age 67, right hemisphere
316.1
2693
Female, age 94, both hemispheres
286.1
1933
Female, age 85, both hemispheres
277.4
1990
Female, age 91, right hemisphere
275.4
2692
Male, age 74, both hemispheres
265.2
2250
Female, age 67, right hemisphere
258.7
2018
Male, age 76, both hemispheres
229.7
Perirhinal gyrus nTPM: 310.1
1847
Female, age 91, left hemisphere
346.2
1794
Male, age 80, right hemisphere
330.9
2521
Female, age 94, right hemisphere
315.3
1841
Female, age 85, right hemisphere
281.3
2848
Male, age 76, right hemisphere
276.8
Subiculum nTPM: 228.1
2619
Male, age 74, both hemispheres
269.2
1977
Female, age 85, both hemispheres
264.0
1901
Male, age 80, both hemispheres
249.7
2438
Female, age 94, left hemisphere
218.2
2042
Male, age 76, both hemispheres
214.5
2729
Female, age 91, right hemisphere
153.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
138.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 138.3
Samples: 197
Max nTPM: 279.9
Min nTPM: 41.3
Std nTPM: 51.0
Median nTPM: 132.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
279.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
278.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
264.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
263.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
256.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
255.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
246.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
244.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
242.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
227.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
225.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
225.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
225.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
220.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
219.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
219.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
217.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
215.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
212.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
210.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
210.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
206.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
205.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
205.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
200.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
196.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
196.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
196.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
196.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
195.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
195.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
194.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
193.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
191.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
191.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
188.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
186.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
182.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
178.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
178.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
177.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
177.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
175.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
175.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
174.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
173.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
173.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
172.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
172.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
170.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
169.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
167.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
167.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
165.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
164.8
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
164.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
162.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
161.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
160.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
158.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
157.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
157.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
157.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
156.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
156.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
154.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
154.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
154.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
153.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
153.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
153.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
153.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
152.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
152.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
152.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
151.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
150.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
149.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
148.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
148.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
146.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
144.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
144.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
142.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
140.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
139.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
139.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
138.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
137.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
137.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
137.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
136.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
136.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
136.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
135.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
135.4
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
132.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
132.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
132.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
131.7
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
130.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
130.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
130.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
129.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
128.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
128.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
128.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
127.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
127.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
126.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
125.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
125.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
124.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
124.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
123.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
123.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
122.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
121.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
121.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
121.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
120.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
119.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
118.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
117.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
116.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
116.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
116.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
115.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
115.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
115.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
114.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
114.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
113.7
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
113.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
111.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
110.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
110.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
106.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
106.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
106.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
103.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
103.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
101.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
101.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
99.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
99.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
98.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
97.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
95.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
94.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
94.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
94.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
93.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
93.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
93.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
92.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
91.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
90.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
90.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
90.2
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
89.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
88.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
87.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
84.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
84.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
82.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
82.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
82.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
79.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
79.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
78.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
77.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
77.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
77.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
76.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
76.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
73.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
73.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
73.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
72.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
72.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
71.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
71.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
70.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
70.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
70.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
69.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
68.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
67.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
64.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
62.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
61.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
60.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
55.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
53.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
41.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
41.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.