MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.7 nTPM
HPA Brain:8.4 nTPM
GTEx:36.7 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:2.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.1
2586 Male, age 75, left hemisphere 12.4
2828 Female, age 72, unknown 10.7
2411 Female, age 72, unknown 9.1
1870 Female, age 42, unknown 8.4
1830 Male, age 51, unknown 8.2
2219 Male, age 76, both hemispheres 7.6
1833 Male, age 53, unknown 6.9
2666 Male, age 74, left hemisphere 6.1
1827 Male, age 72, unknown 5.9
2019 Male, age 18, unknown 5.5
Dorsal raphe nucleus
nTPM: 8.3
2016 Female, age 72, unknown 8.8
2298 Female, age 72, unknown 8.6
2750 Male, age 76, both hemispheres 8.3
2047 Male, age 72, unknown 8.0
1828 Male, age 53, unknown 7.5
Inferior colliculus
nTPM: 6.4
1890 Male, age 53, unknown 7.0
1848 Female, age 42, unknown 6.8
2849 Male, age 72, unknown 6.2
2097 Female, age 72, unknown 5.6
Median raphe nucleus
nTPM: 6.3
2220 Male, age 76, midline 6.3
Periaquaductal grey, anterior
nTPM: 7.3
1795 Male, age 51, unknown 9.4
2502 Female, age 75, unknown 6.8
1947 Male, age 18, unknown 5.7
Periaquaductal grey, dorsal
nTPM: 5.6
2464 Female, age 72, unknown 6.9
1840 Male, age 53, unknown 5.7
1831 Male, age 72, unknown 5.1
2850 Male, age 76, both hemispheres 4.8
Periaquaductal grey, lateral
nTPM: 6.4
2053 Male, age 18, unknown 6.9
2272 Male, age 74, both hemispheres 6.5
2140 Male, age 76, both hemispheres 5.8
Pretectal area
nTPM: 6.4
2007 Male, age 72, unknown 7.9
2273 Male, age 74, both hemispheres 7.5
2407 Male, age 75, both hemispheres 7.5
2667 Female, age 75, unknown 7.3
1817 Female, age 42, unknown 7.2
1815 Male, age 53, unknown 6.4
2316 Male, age 76, right hemisphere 6.4
2825 Male, age 18, unknown 5.8
1944 Female, age 72, unknown 5.4
1816 Male, age 51, unknown 5.1
2224 Female, age 72, unknown 3.6
Red nucleus
nTPM: 8.4
2227 Male, age 72, unknown 10.5
2769 Male, age 72, unknown 10.3
2588 Male, age 74, left hemisphere 9.4
2785 Male, age 18, unknown 9.3
1904 Male, age 53, unknown 8.7
1954 Female, age 42, unknown 8.7
2503 Female, age 72, unknown 8.5
2584 Male, age 75, left hemisphere 8.2
2725 Female, age 75, unknown 7.1
2823 Male, age 76, right hemisphere 6.9
1865 Male, age 51, unknown 6.5
1821 Female, age 72, unknown 6.3
Substantia nigra
nTPM: 7.3
1916 Female, age 42, unknown 11.0
2583 Male, age 75, right hemisphere 9.1
2409 Female, age 72, unknown 8.7
1851 Male, age 51, unknown 8.3
2590 Female, age 75, unknown 7.6
2665 Male, age 74, both hemispheres 6.6
2699 Male, age 18, unknown 6.4
1889 Female, age 72, unknown 5.7
1941 Male, age 53, unknown 4.9
2241 Male, age 72, unknown 4.5
Superior colliculus
nTPM: 6.6
2261 Male, age 18, unknown 11.0
2664 Male, age 75, both hemispheres 9.3
1796 Male, age 53, unknown 7.4
1995 Male, age 72, unknown 7.3
2668 Female, age 75, unknown 6.1
1839 Male, age 51, unknown 6.0
2587 Male, age 74, left hemisphere 6.0
2087 Female, age 72, unknown 4.5
1913 Female, age 42, unknown 4.3
1895 Male, age 76, right hemisphere 3.7
Ventral tegmental area
nTPM: 7.6
2410 Female, age 72, unknown 9.8
2021 Male, age 53, unknown 9.1
1915 Female, age 42, unknown 8.6
1942 Male, age 51, unknown 7.4
2223 Female, age 72, unknown 7.1
2218 Male, age 76, both hemispheres 3.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.7
Samples: 139

Max nTPM: 94.6
Min nTPM: 13.4
Std nTPM: 12.9
Median nTPM: 36.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 94.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 76.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 71.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 68.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 61.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 59.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 56.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 53.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 19.2
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 17.8
Sample C Male 16.1
Sample D Male 19.2
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 12.2
Sample A Female 17.7
Sample B Female 16.0
Sample C Male 12.2
Sample D Male 13.5
Periaqueductal gray
nTPM: 15.3
Samples: 3

Max nTPM: 16.6
Min nTPM: 14.4
Sample B Female 14.9
Sample C Male 16.6
Sample D Male 14.4
Superior colliculi
nTPM: 13.6
Samples: 4

Max nTPM: 15.2
Min nTPM: 12.3
Sample A Female 12.3
Sample B Female 15.2
Sample C Male 12.4
Sample D Male 14.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.2
Sample A Male 3.1
Sample B Male 2.2
Sample C Female 2.7
Sample D Female 3.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70192171 Antisense, RP_050517_01_D06, Mouse strain C57BL/6J (56 days, male) 0.2

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