MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.0 nTPM
HPA Brain:114.8 nTPM
GTEx:71.0 nTPM
FANTOM5:112.8 Scaled Tags Per Million
Pig:152.0 nTPM
Mouse:124.2 nTPM
Allen mouse:11.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.3
2019 Male, age 18, unknown 139.1
1827 Male, age 72, unknown 93.6
2411 Female, age 72, unknown 93.4
2666 Male, age 74, left hemisphere 90.7
2828 Female, age 72, unknown 88.4
2219 Male, age 76, both hemispheres 83.5
2586 Male, age 75, left hemisphere 81.3
1830 Male, age 51, unknown 80.0
1833 Male, age 53, unknown 77.8
1870 Female, age 42, unknown 75.4
Dorsal raphe nucleus
nTPM: 87.5
2298 Female, age 72, unknown 98.3
2047 Male, age 72, unknown 91.2
1828 Male, age 53, unknown 91.1
2750 Male, age 76, both hemispheres 90.1
2016 Female, age 72, unknown 66.6
Inferior colliculus
nTPM: 86.0
2097 Female, age 72, unknown 100.5
1890 Male, age 53, unknown 89.2
1848 Female, age 42, unknown 79.8
2849 Male, age 72, unknown 74.6
Median raphe nucleus
nTPM: 100.9
2220 Male, age 76, midline 100.9
Periaquaductal grey, anterior
nTPM: 88.0
1795 Male, age 51, unknown 95.7
2502 Female, age 75, unknown 90.7
1947 Male, age 18, unknown 77.7
Periaquaductal grey, dorsal
nTPM: 72.8
1831 Male, age 72, unknown 79.6
2850 Male, age 76, both hemispheres 76.0
2464 Female, age 72, unknown 68.9
1840 Male, age 53, unknown 66.8
Periaquaductal grey, lateral
nTPM: 81.5
2272 Male, age 74, both hemispheres 98.8
2140 Male, age 76, both hemispheres 73.5
2053 Male, age 18, unknown 72.2
Pretectal area
nTPM: 114.8
1817 Female, age 42, unknown 156.3
1944 Female, age 72, unknown 154.7
2007 Male, age 72, unknown 153.9
1816 Male, age 51, unknown 152.8
2667 Female, age 75, unknown 120.2
1815 Male, age 53, unknown 115.3
2273 Male, age 74, both hemispheres 100.4
2224 Female, age 72, unknown 87.1
2407 Male, age 75, both hemispheres 82.4
2825 Male, age 18, unknown 70.2
2316 Male, age 76, right hemisphere 69.1
Red nucleus
nTPM: 90.7
2785 Male, age 18, unknown 129.3
1821 Female, age 72, unknown 100.7
2725 Female, age 75, unknown 92.8
1865 Male, age 51, unknown 91.5
2584 Male, age 75, left hemisphere 89.9
2823 Male, age 76, right hemisphere 86.4
2503 Female, age 72, unknown 86.0
1954 Female, age 42, unknown 84.8
2769 Male, age 72, unknown 84.6
2227 Male, age 72, unknown 81.8
2588 Male, age 74, left hemisphere 80.9
1904 Male, age 53, unknown 79.4
Substantia nigra
nTPM: 96.5
1941 Male, age 53, unknown 126.3
1889 Female, age 72, unknown 125.2
1916 Female, age 42, unknown 119.2
2665 Male, age 74, both hemispheres 99.3
1851 Male, age 51, unknown 96.3
2583 Male, age 75, right hemisphere 89.2
2409 Female, age 72, unknown 87.6
2241 Male, age 72, unknown 74.3
2699 Male, age 18, unknown 74.1
2590 Female, age 75, unknown 73.0
Superior colliculus
nTPM: 94.3
2087 Female, age 72, unknown 126.5
2261 Male, age 18, unknown 103.5
1796 Male, age 53, unknown 103.1
2668 Female, age 75, unknown 102.7
1913 Female, age 42, unknown 98.3
1995 Male, age 72, unknown 92.8
2587 Male, age 74, left hemisphere 89.9
1895 Male, age 76, right hemisphere 85.3
1839 Male, age 51, unknown 78.5
2664 Male, age 75, both hemispheres 62.3
Ventral tegmental area
nTPM: 89.4
2410 Female, age 72, unknown 106.4
2218 Male, age 76, both hemispheres 105.0
1915 Female, age 42, unknown 89.6
2223 Female, age 72, unknown 89.1
1942 Male, age 51, unknown 73.5
2021 Male, age 53, unknown 72.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 71.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.0
Samples: 139

Max nTPM: 239.1
Min nTPM: 33.7
Std nTPM: 24.5
Median nTPM: 64.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 239.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 177.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 123.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 120.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 116.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 109.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 107.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 106.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 104.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 102.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 101.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 112.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.8
FF:10158-103A5 76 years, female 112.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 152.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 131.1
Samples: 4

Max nTPM: 155.9
Min nTPM: 89.7
Sample A Female 155.9
Sample B Female 89.7
Sample C Male 144.5
Sample D Male 134.2
Midbrain
nTPM: 152.0
Samples: 4

Max nTPM: 254.9
Min nTPM: 105.0
Sample A Female 254.9
Sample B Female 105.0
Sample C Male 135.9
Sample D Male 112.1
Periaqueductal gray
nTPM: 96.3
Samples: 3

Max nTPM: 105.3
Min nTPM: 90.6
Sample B Female 93.1
Sample C Male 105.3
Sample D Male 90.6
Superior colliculi
nTPM: 146.8
Samples: 4

Max nTPM: 172.7
Min nTPM: 114.7
Sample A Female 152.2
Sample B Female 114.7
Sample C Male 172.7
Sample D Male 147.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 124.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.2
Samples: 4

Max nTPM: 125.9
Min nTPM: 121.9
Sample A Male 125.9
Sample B Male 124.1
Sample C Female 121.9
Sample D Female 124.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.7
532632 Antisense, RP_040810_02_G07, Mouse strain C57BL/6J (56 days, male) 11.7

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