MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.1 nTPM
HPA Brain:92.2 nTPM
GTEx:39.1 nTPM
FANTOM5:73.3 Scaled Tags Per Million
Pig:78.0 nTPM
Mouse:59.3 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.2
2586 Male, age 75, left hemisphere 114.2
2828 Female, age 72, unknown 96.0
2666 Male, age 74, left hemisphere 95.3
1827 Male, age 72, unknown 87.3
2019 Male, age 18, unknown 86.9
2219 Male, age 76, both hemispheres 73.2
2411 Female, age 72, unknown 70.2
1870 Female, age 42, unknown 68.8
1833 Male, age 53, unknown 67.0
1830 Male, age 51, unknown 63.2
Dorsal raphe nucleus
nTPM: 74.8
2298 Female, age 72, unknown 78.6
1828 Male, age 53, unknown 78.0
2047 Male, age 72, unknown 77.0
2016 Female, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 70.2
Inferior colliculus
nTPM: 75.1
2097 Female, age 72, unknown 85.9
1890 Male, age 53, unknown 75.2
1848 Female, age 42, unknown 73.2
2849 Male, age 72, unknown 66.2
Median raphe nucleus
nTPM: 75.0
2220 Male, age 76, midline 75.0
Periaquaductal grey, anterior
nTPM: 88.5
1795 Male, age 51, unknown 93.3
2502 Female, age 75, unknown 90.4
1947 Male, age 18, unknown 81.8
Periaquaductal grey, dorsal
nTPM: 71.2
1831 Male, age 72, unknown 82.2
1840 Male, age 53, unknown 70.7
2464 Female, age 72, unknown 67.1
2850 Male, age 76, both hemispheres 64.7
Periaquaductal grey, lateral
nTPM: 68.5
2053 Male, age 18, unknown 78.6
2140 Male, age 76, both hemispheres 64.1
2272 Male, age 74, both hemispheres 62.9
Pretectal area
nTPM: 92.2
1816 Male, age 51, unknown 125.2
1944 Female, age 72, unknown 112.6
1817 Female, age 42, unknown 110.4
2007 Male, age 72, unknown 106.2
1815 Male, age 53, unknown 97.3
2667 Female, age 75, unknown 89.2
2407 Male, age 75, both hemispheres 88.9
2825 Male, age 18, unknown 73.1
2224 Female, age 72, unknown 72.6
2316 Male, age 76, right hemisphere 70.2
2273 Male, age 74, both hemispheres 68.1
Red nucleus
nTPM: 78.3
2584 Male, age 75, left hemisphere 96.6
2588 Male, age 74, left hemisphere 90.4
2785 Male, age 18, unknown 84.1
1821 Female, age 72, unknown 77.4
2725 Female, age 75, unknown 77.1
1904 Male, age 53, unknown 77.0
1865 Male, age 51, unknown 75.4
2503 Female, age 72, unknown 75.0
1954 Female, age 42, unknown 73.8
2769 Male, age 72, unknown 73.6
2227 Male, age 72, unknown 70.7
2823 Male, age 76, right hemisphere 67.9
Substantia nigra
nTPM: 91.4
1916 Female, age 42, unknown 108.0
2665 Male, age 74, both hemispheres 101.8
1941 Male, age 53, unknown 97.6
1851 Male, age 51, unknown 96.9
1889 Female, age 72, unknown 94.6
2583 Male, age 75, right hemisphere 93.3
2241 Male, age 72, unknown 86.4
2590 Female, age 75, unknown 82.1
2699 Male, age 18, unknown 78.6
2409 Female, age 72, unknown 74.6
Superior colliculus
nTPM: 88.0
2664 Male, age 75, both hemispheres 112.0
2087 Female, age 72, unknown 109.2
2261 Male, age 18, unknown 99.8
2668 Female, age 75, unknown 96.0
1796 Male, age 53, unknown 91.8
1995 Male, age 72, unknown 79.0
1913 Female, age 42, unknown 78.3
1895 Male, age 76, right hemisphere 72.0
1839 Male, age 51, unknown 71.4
2587 Male, age 74, left hemisphere 70.2
Ventral tegmental area
nTPM: 82.4
1915 Female, age 42, unknown 86.9
2410 Female, age 72, unknown 86.4
1942 Male, age 51, unknown 84.4
2218 Male, age 76, both hemispheres 83.2
2021 Male, age 53, unknown 78.2
2223 Female, age 72, unknown 75.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.1
Samples: 139

Max nTPM: 70.2
Min nTPM: 23.6
Std nTPM: 7.6
Median nTPM: 38.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 70.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 56.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 54.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 53.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 53.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 52.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 52.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 52.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 50.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.3
FF:10158-103A5 76 years, female 73.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.5
Samples: 4

Max nTPM: 70.3
Min nTPM: 47.1
Sample A Female 70.3
Sample B Female 47.1
Sample C Male 69.5
Sample D Male 51.1
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 118.6
Min nTPM: 56.0
Sample A Female 64.5
Sample B Female 56.0
Sample C Male 118.6
Sample D Male 72.9
Periaqueductal gray
nTPM: 49.8
Samples: 3

Max nTPM: 53.7
Min nTPM: 42.5
Sample B Female 53.3
Sample C Male 53.7
Sample D Male 42.5
Superior colliculi
nTPM: 71.3
Samples: 4

Max nTPM: 92.4
Min nTPM: 53.8
Sample A Female 63.6
Sample B Female 53.8
Sample C Male 92.4
Sample D Male 75.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 59.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.3
Samples: 4

Max nTPM: 62.7
Min nTPM: 54.7
Sample A Male 54.7
Sample B Male 57.6
Sample C Female 62.7
Sample D Female 62.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
513243 Antisense, RP_040810_01_D11, Mouse strain C57BL/6J (56 days, male) 1.8

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