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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
49.1
nTPM
Monaco:
69.0
nTPM
Schmiedel:
50.0
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
49.1
HPA sample
nTPM
gdT-cell nTPM: 37.1
Samples: 6
Max nTPM: 45.3
Min nTPM: 29.0
P10809_1007
29.0
P10809_1022
45.3
P10809_1041
39.4
P10809_1060
30.2
P10809_1077
39.3
P10809_1098
39.2
MAIT T-cell nTPM: 30.4
Samples: 6
Max nTPM: 43.1
Min nTPM: 17.2
P10809_1006
24.4
P10809_1024
43.1
P10809_1043
39.7
P10809_1062
28.7
P10809_1083
29.0
P10809_1097
17.2
Memory CD4 T-cell nTPM: 32.3
Samples: 6
Max nTPM: 35.4
Min nTPM: 27.8
P10809_1014
27.8
P10809_1026
34.0
P10809_1045
35.4
P10809_1064
31.0
P10809_1086
32.9
P10809_1113
32.9
Memory CD8 T-cell nTPM: 40.0
Samples: 5
Max nTPM: 46.3
Min nTPM: 35.3
P10809_1012
35.3
P10809_1027
46.3
P10809_1046
37.2
P10809_1065
38.9
P10809_1111
42.1
Naive CD4 T-cell nTPM: 28.7
Samples: 6
Max nTPM: 34.5
Min nTPM: 21.3
P10809_1015
21.3
P10809_1030
33.1
P10809_1049
34.5
P10809_1068
24.3
P10809_1085
33.0
P10809_1112
25.7
Naive CD8 T-cell nTPM: 30.9
Samples: 6
Max nTPM: 39.1
Min nTPM: 20.6
P10809_1016
20.6
P10809_1031
28.4
P10809_1050
33.2
P10809_1069
38.7
P10809_1087
39.1
P10809_1110
25.4
T-reg nTPM: 49.1
Samples: 6
Max nTPM: 64.3
Min nTPM: 37.3
P10809_1018
37.3
P10809_1037
44.0
P10809_1056
64.3
P10809_1075
41.9
P10809_1094
51.9
P10809_1106
55.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
69.0
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 36.5
Samples: 4
Max nTPM: 44.8
Min nTPM: 27.6
RHH5202_R3573
44.8
RHH5230_R3602
35.4
RHH5259_R3631
27.6
RHH5288_R3660
38.2
Effector memory CD8 T-cell nTPM: 63.1
Samples: 4
Max nTPM: 69.7
Min nTPM: 53.5
RHH5203_R3574
63.9
RHH5231_R3603
53.5
RHH5260_R3632
65.2
RHH5289_R3661
69.7
MAIT T-cell nTPM: 51.8
Samples: 4
Max nTPM: 60.2
Min nTPM: 47.6
RHH5233_R3605
50.6
RHH5205_R3576
48.8
RHH5262_R3634
47.6
RHH5297_R3663
60.2
Memory CD4 T-cell TFH nTPM: 49.4
Samples: 4
Max nTPM: 55.6
Min nTPM: 46.3
RHH5300_R3666
55.6
RHH5236_R3608
49.2
RHH5265_R3637
46.3
RHH5208_R3579
46.5
Memory CD4 T-cell Th1 nTPM: 41.4
Samples: 4
Max nTPM: 55.4
Min nTPM: 30.9
RHH5210_R3581
55.4
RHH5302_R3668
36.8
RHH5238_R3610
30.9
RHH5267_R3639
42.4
Memory CD4 T-cell Th1/Th17 nTPM: 49.1
Samples: 4
Max nTPM: 66.5
Min nTPM: 31.0
RHH5303_R3669
66.5
RHH5211_R3582
44.3
RHH5239_R3611
31.0
RHH5268_R3640
54.6
Memory CD4 T-cell Th17 nTPM: 56.1
Samples: 4
Max nTPM: 71.1
Min nTPM: 44.1
RHH5304_R3670
71.1
RHH5212_R3583
44.2
RHH5240_R3612
64.8
RHH5269_R3641
44.1
Memory CD4 T-cell Th2 nTPM: 56.5
Samples: 4
Max nTPM: 58.7
Min nTPM: 52.2
RHH5305_R3671
58.4
RHH5213_R3584
56.5
RHH5241_R3613
58.7
RHH5270_R3642
52.2
Naive CD4 T-cell nTPM: 37.0
Samples: 4
Max nTPM: 45.3
Min nTPM: 30.4
RHH5306_R3672
36.1
RHH5214_R3585
45.3
RHH5242_R3614
36.2
RHH5271_R3643
30.4
Naive CD8 T-cell nTPM: 29.5
Samples: 4
Max nTPM: 42.0
Min nTPM: 14.9
RHH5201_R3572
33.1
RHH5229_R3601
14.9
RHH5258_R3630
27.9
RHH5287_R3659
42.0
Non-Vd2 gdTCR nTPM: 69.0
Samples: 4
Max nTPM: 88.8
Min nTPM: 60.3
RHH5235_R3607
60.3
RHH5264_R3636
62.2
RHH5207_R3578
88.8
RHH5299_R3665
64.5
T-reg nTPM: 48.3
Samples: 4
Max nTPM: 53.8
Min nTPM: 42.9
RHH5301_R3667
52.3
RHH5237_R3609
53.8
RHH5266_R3638
42.9
RHH5209_R3580
44.2
Terminal effector memory CD4 T-cell nTPM: 52.4
Samples: 2
Max nTPM: 56.2
Min nTPM: 48.6
RHH5243_R3615
48.6
RHH5272_R3644
56.2
Terminal effector memory CD8 T-cell nTPM: 63.8
Samples: 4
Max nTPM: 69.7
Min nTPM: 58.1
RHH5232_R3604
61.9
RHH5204_R3575
58.1
RHH5261_R3633
65.6
RHH5296_R3662
69.7
Vd2 gdTCR nTPM: 69.0
Samples: 4
Max nTPM: 85.8
Min nTPM: 56.2
RHH5234_R3606
67.8
RHH5206_R3577
85.8
RHH5263_R3635
66.1
RHH5298_R3664
56.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
