MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.7 nTPM
HPA Brain:25.1 nTPM
GTEx:10.7 nTPM
FANTOM5:124.0 Scaled Tags Per Million
Pig:14.9 nTPM
Mouse:11.2 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2586 Male, age 75, left hemisphere 28.2
2019 Male, age 18, unknown 25.8
2828 Female, age 72, unknown 24.5
2219 Male, age 76, both hemispheres 22.8
2666 Male, age 74, left hemisphere 22.8
1827 Male, age 72, unknown 22.4
1870 Female, age 42, unknown 22.4
1833 Male, age 53, unknown 21.9
1830 Male, age 51, unknown 21.4
2411 Female, age 72, unknown 19.9
Dorsal raphe nucleus
nTPM: 21.6
2750 Male, age 76, both hemispheres 28.7
2047 Male, age 72, unknown 21.1
1828 Male, age 53, unknown 20.9
2298 Female, age 72, unknown 18.9
2016 Female, age 72, unknown 18.3
Inferior colliculus
nTPM: 17.6
2849 Male, age 72, unknown 19.8
1848 Female, age 42, unknown 17.8
1890 Male, age 53, unknown 16.8
2097 Female, age 72, unknown 15.9
Median raphe nucleus
nTPM: 25.1
2220 Male, age 76, midline 25.1
Periaquaductal grey, anterior
nTPM: 19.6
1795 Male, age 51, unknown 22.6
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 19.3
1831 Male, age 72, unknown 24.3
2850 Male, age 76, both hemispheres 20.7
1840 Male, age 53, unknown 16.6
2464 Female, age 72, unknown 15.8
Periaquaductal grey, lateral
nTPM: 18.5
2272 Male, age 74, both hemispheres 20.0
2140 Male, age 76, both hemispheres 18.1
2053 Male, age 18, unknown 17.3
Pretectal area
nTPM: 23.0
2667 Female, age 75, unknown 28.5
1815 Male, age 53, unknown 24.6
2407 Male, age 75, both hemispheres 24.5
2825 Male, age 18, unknown 24.2
2316 Male, age 76, right hemisphere 23.4
1817 Female, age 42, unknown 23.0
2273 Male, age 74, both hemispheres 21.8
2007 Male, age 72, unknown 21.6
1816 Male, age 51, unknown 21.3
1944 Female, age 72, unknown 20.0
2224 Female, age 72, unknown 19.7
Red nucleus
nTPM: 24.4
2823 Male, age 76, right hemisphere 32.4
2769 Male, age 72, unknown 27.3
1904 Male, age 53, unknown 26.4
1821 Female, age 72, unknown 25.6
2588 Male, age 74, left hemisphere 24.6
2584 Male, age 75, left hemisphere 24.2
1865 Male, age 51, unknown 23.5
2785 Male, age 18, unknown 23.1
2227 Male, age 72, unknown 22.7
2725 Female, age 75, unknown 21.7
2503 Female, age 72, unknown 21.3
1954 Female, age 42, unknown 20.2
Substantia nigra
nTPM: 23.6
1916 Female, age 42, unknown 35.2
2583 Male, age 75, right hemisphere 25.3
2699 Male, age 18, unknown 25.2
2409 Female, age 72, unknown 24.8
1851 Male, age 51, unknown 24.0
2590 Female, age 75, unknown 23.1
1941 Male, age 53, unknown 22.8
1889 Female, age 72, unknown 20.1
2665 Male, age 74, both hemispheres 18.8
2241 Male, age 72, unknown 16.6
Superior colliculus
nTPM: 22.0
1796 Male, age 53, unknown 26.7
1913 Female, age 42, unknown 23.5
1839 Male, age 51, unknown 23.2
2668 Female, age 75, unknown 22.5
2664 Male, age 75, both hemispheres 22.3
1995 Male, age 72, unknown 22.1
2587 Male, age 74, left hemisphere 21.3
1895 Male, age 76, right hemisphere 21.1
2261 Male, age 18, unknown 19.3
2087 Female, age 72, unknown 18.6
Ventral tegmental area
nTPM: 22.8
2218 Male, age 76, both hemispheres 28.7
2223 Female, age 72, unknown 25.1
2410 Female, age 72, unknown 21.6
1942 Male, age 51, unknown 21.3
2021 Male, age 53, unknown 20.8
1915 Female, age 42, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 139

Max nTPM: 32.0
Min nTPM: 5.7
Std nTPM: 3.2
Median nTPM: 10.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 32.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 16.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 16.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 16.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 15.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 14.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 124.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.0
FF:10158-103A5 76 years, female 124.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 17.8
Min nTPM: 12.8
Sample A Female 12.8
Sample B Female 13.5
Sample C Male 15.6
Sample D Male 17.8
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.6
Sample A Female 17.1
Sample B Female 13.6
Sample C Male 14.5
Sample D Male 12.6
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 13.5
Min nTPM: 13.3
Sample B Female 13.3
Sample C Male 13.5
Sample D Male 13.5
Superior colliculi
nTPM: 13.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 14.1
Sample C Male 13.3
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.2
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.8
Sample A Male 12.4
Sample B Male 10.2
Sample C Female 9.8
Sample D Female 12.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
1954 Antisense, RP_040604_02_B01, Mouse strain C57BL/6J (56 days, male) 6.5
1955 Antisense, RP_040604_02_B01, Mouse strain C57BL/6J (56 days, male) 0.6

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