MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.0 nTPM
HPA Brain:43.6 nTPM
GTEx:26.0 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Pig:20.6 nTPM
Mouse:33.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.9
1870 Female, age 42, unknown 28.5
2019 Male, age 18, unknown 23.1
1833 Male, age 53, unknown 22.5
1830 Male, age 51, unknown 20.3
2666 Male, age 74, left hemisphere 20.2
1827 Male, age 72, unknown 19.8
2828 Female, age 72, unknown 18.6
2411 Female, age 72, unknown 18.1
2586 Male, age 75, left hemisphere 17.6
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 19.8
2298 Female, age 72, unknown 26.9
2750 Male, age 76, both hemispheres 21.0
1828 Male, age 53, unknown 17.7
2047 Male, age 72, unknown 17.5
2016 Female, age 72, unknown 16.1
Inferior colliculus
nTPM: 18.1
1848 Female, age 42, unknown 20.8
2849 Male, age 72, unknown 19.0
1890 Male, age 53, unknown 16.5
2097 Female, age 72, unknown 16.0
Median raphe nucleus
nTPM: 43.6
2220 Male, age 76, midline 43.6
Periaquaductal grey, anterior
nTPM: 29.3
1947 Male, age 18, unknown 36.6
2502 Female, age 75, unknown 28.9
1795 Male, age 51, unknown 22.5
Periaquaductal grey, dorsal
nTPM: 19.0
2850 Male, age 76, both hemispheres 25.1
1840 Male, age 53, unknown 19.6
1831 Male, age 72, unknown 19.2
2464 Female, age 72, unknown 12.3
Periaquaductal grey, lateral
nTPM: 19.1
2140 Male, age 76, both hemispheres 20.6
2272 Male, age 74, both hemispheres 18.6
2053 Male, age 18, unknown 18.1
Pretectal area
nTPM: 22.6
2407 Male, age 75, both hemispheres 27.9
1817 Female, age 42, unknown 25.7
2007 Male, age 72, unknown 24.1
2825 Male, age 18, unknown 23.7
1944 Female, age 72, unknown 23.3
2667 Female, age 75, unknown 23.2
1816 Male, age 51, unknown 22.4
1815 Male, age 53, unknown 22.0
2224 Female, age 72, unknown 20.6
2273 Male, age 74, both hemispheres 18.3
2316 Male, age 76, right hemisphere 17.0
Red nucleus
nTPM: 25.2
1821 Female, age 72, unknown 37.4
1954 Female, age 42, unknown 36.7
1904 Male, age 53, unknown 30.1
1865 Male, age 51, unknown 29.1
2588 Male, age 74, left hemisphere 23.9
2725 Female, age 75, unknown 23.7
2503 Female, age 72, unknown 23.2
2227 Male, age 72, unknown 22.3
2769 Male, age 72, unknown 21.9
2584 Male, age 75, left hemisphere 19.8
2785 Male, age 18, unknown 17.2
2823 Male, age 76, right hemisphere 16.7
Substantia nigra
nTPM: 21.7
2409 Female, age 72, unknown 28.5
1916 Female, age 42, unknown 26.3
1889 Female, age 72, unknown 25.7
1851 Male, age 51, unknown 24.9
2665 Male, age 74, both hemispheres 24.2
2590 Female, age 75, unknown 21.6
2241 Male, age 72, unknown 20.6
2699 Male, age 18, unknown 16.6
1941 Male, age 53, unknown 15.3
2583 Male, age 75, right hemisphere 13.6
Superior colliculus
nTPM: 22.4
2587 Male, age 74, left hemisphere 31.1
1796 Male, age 53, unknown 26.1
2261 Male, age 18, unknown 25.6
1995 Male, age 72, unknown 25.1
1913 Female, age 42, unknown 25.0
2668 Female, age 75, unknown 21.1
1839 Male, age 51, unknown 20.9
2087 Female, age 72, unknown 20.9
2664 Male, age 75, both hemispheres 15.2
1895 Male, age 76, right hemisphere 13.4
Ventral tegmental area
nTPM: 20.2
2223 Female, age 72, unknown 24.3
2218 Male, age 76, both hemispheres 22.4
1915 Female, age 42, unknown 19.3
2021 Male, age 53, unknown 18.6
2410 Female, age 72, unknown 18.4
1942 Male, age 51, unknown 18.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.0
Samples: 139

Max nTPM: 164.1
Min nTPM: 7.7
Std nTPM: 25.0
Median nTPM: 17.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 164.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 140.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 132.7
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 102.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 100.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 92.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 86.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 70.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 67.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 61.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 55.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.7
FF:10158-103A5 76 years, female 92.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 24.3
Min nTPM: 17.2
Sample A Female 20.4
Sample B Female 17.9
Sample C Male 24.3
Sample D Male 17.2
Midbrain
nTPM: 20.6
Samples: 4

Max nTPM: 22.9
Min nTPM: 19.2
Sample A Female 19.9
Sample B Female 19.2
Sample C Male 22.9
Sample D Male 20.3
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 19.5
Min nTPM: 17.3
Sample B Female 17.3
Sample C Male 19.5
Sample D Male 17.7
Superior colliculi
nTPM: 19.0
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 18.8
Sample C Male 20.6
Sample D Male 18.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 34.7
Min nTPM: 31.6
Sample A Male 33.8
Sample B Male 34.7
Sample C Female 33.8
Sample D Female 31.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68191390 Antisense, RP_041129_01_A12, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org