MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.7 nTPM
HPA Brain:143.8 nTPM
GTEx:92.7 nTPM
FANTOM5:79.3 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:45.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 143.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.9
2586 Male, age 75, left hemisphere 162.0
2666 Male, age 74, left hemisphere 140.4
2828 Female, age 72, unknown 133.3
1870 Female, age 42, unknown 133.1
2019 Male, age 18, unknown 133.0
1827 Male, age 72, unknown 132.4
2411 Female, age 72, unknown 131.7
1830 Male, age 51, unknown 119.6
2219 Male, age 76, both hemispheres 117.6
1833 Male, age 53, unknown 116.3
Dorsal raphe nucleus
nTPM: 119.0
2016 Female, age 72, unknown 125.7
1828 Male, age 53, unknown 123.3
2298 Female, age 72, unknown 117.8
2750 Male, age 76, both hemispheres 117.4
2047 Male, age 72, unknown 110.9
Inferior colliculus
nTPM: 143.8
2097 Female, age 72, unknown 166.2
1890 Male, age 53, unknown 152.1
1848 Female, age 42, unknown 138.7
2849 Male, age 72, unknown 118.4
Median raphe nucleus
nTPM: 104.1
2220 Male, age 76, midline 104.1
Periaquaductal grey, anterior
nTPM: 130.1
2502 Female, age 75, unknown 150.1
1947 Male, age 18, unknown 125.3
1795 Male, age 51, unknown 114.9
Periaquaductal grey, dorsal
nTPM: 123.2
1840 Male, age 53, unknown 133.9
2464 Female, age 72, unknown 129.3
1831 Male, age 72, unknown 128.9
2850 Male, age 76, both hemispheres 100.8
Periaquaductal grey, lateral
nTPM: 109.8
2053 Male, age 18, unknown 126.0
2140 Male, age 76, both hemispheres 111.8
2272 Male, age 74, both hemispheres 91.5
Pretectal area
nTPM: 131.6
1816 Male, age 51, unknown 165.5
1815 Male, age 53, unknown 146.6
1817 Female, age 42, unknown 142.9
2007 Male, age 72, unknown 142.1
1944 Female, age 72, unknown 139.9
2316 Male, age 76, right hemisphere 132.6
2407 Male, age 75, both hemispheres 127.5
2667 Female, age 75, unknown 120.6
2825 Male, age 18, unknown 119.6
2224 Female, age 72, unknown 110.5
2273 Male, age 74, both hemispheres 99.8
Red nucleus
nTPM: 143.1
1821 Female, age 72, unknown 161.0
2503 Female, age 72, unknown 155.6
2588 Male, age 74, left hemisphere 155.4
1954 Female, age 42, unknown 151.2
1904 Male, age 53, unknown 147.7
2227 Male, age 72, unknown 144.4
2769 Male, age 72, unknown 140.0
1865 Male, age 51, unknown 139.1
2584 Male, age 75, left hemisphere 138.0
2823 Male, age 76, right hemisphere 133.4
2785 Male, age 18, unknown 131.2
2725 Female, age 75, unknown 119.7
Substantia nigra
nTPM: 128.7
2241 Male, age 72, unknown 147.5
1889 Female, age 72, unknown 141.0
2665 Male, age 74, both hemispheres 134.2
1851 Male, age 51, unknown 132.9
2409 Female, age 72, unknown 126.4
1916 Female, age 42, unknown 122.7
2699 Male, age 18, unknown 122.3
2590 Female, age 75, unknown 121.4
2583 Male, age 75, right hemisphere 121.0
1941 Male, age 53, unknown 117.3
Superior colliculus
nTPM: 137.0
2668 Female, age 75, unknown 160.1
2261 Male, age 18, unknown 149.4
2664 Male, age 75, both hemispheres 146.3
2087 Female, age 72, unknown 143.1
1995 Male, age 72, unknown 133.6
1913 Female, age 42, unknown 132.5
2587 Male, age 74, left hemisphere 129.5
1895 Male, age 76, right hemisphere 127.6
1796 Male, age 53, unknown 126.1
1839 Male, age 51, unknown 121.4
Ventral tegmental area
nTPM: 119.2
2410 Female, age 72, unknown 129.2
1942 Male, age 51, unknown 128.8
1915 Female, age 42, unknown 122.3
2223 Female, age 72, unknown 116.8
2021 Male, age 53, unknown 113.0
2218 Male, age 76, both hemispheres 104.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 92.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.7
Samples: 139

Max nTPM: 153.9
Min nTPM: 62.2
Std nTPM: 15.8
Median nTPM: 91.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 153.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 133.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 129.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 128.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 127.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 127.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 122.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 120.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 120.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 119.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 116.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.3
FF:10158-103A5 76 years, female 79.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 26.1
Sample A Female 32.3
Sample B Female 33.2
Sample C Male 26.1
Sample D Male 33.5
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 38.5
Min nTPM: 23.1
Sample A Female 38.5
Sample B Female 35.7
Sample C Male 23.1
Sample D Male 25.7
Periaqueductal gray
nTPM: 32.2
Samples: 3

Max nTPM: 34.9
Min nTPM: 30.8
Sample B Female 34.9
Sample C Male 30.9
Sample D Male 30.8
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 35.5
Min nTPM: 25.4
Sample A Female 28.3
Sample B Female 35.5
Sample C Male 26.5
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 47.3
Min nTPM: 42.2
Sample A Male 47.3
Sample B Male 42.2
Sample C Female 44.9
Sample D Female 45.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74821957 Antisense, RP_060321_02_F04, Mouse strain C57BL/6J (56 days, male) 0.0

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