MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA Brain:54.9 nTPM
GTEx:14.6 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:10.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.9
2586 Male, age 75, left hemisphere 57.2
2666 Male, age 74, left hemisphere 48.2
1827 Male, age 72, unknown 45.1
2219 Male, age 76, both hemispheres 44.6
2828 Female, age 72, unknown 43.2
1870 Female, age 42, unknown 38.3
1833 Male, age 53, unknown 37.3
1830 Male, age 51, unknown 36.9
2411 Female, age 72, unknown 35.1
2019 Male, age 18, unknown 33.5
Dorsal raphe nucleus
nTPM: 45.3
2047 Male, age 72, unknown 52.6
2016 Female, age 72, unknown 49.3
2298 Female, age 72, unknown 47.6
1828 Male, age 53, unknown 42.2
2750 Male, age 76, both hemispheres 34.7
Inferior colliculus
nTPM: 42.5
2849 Male, age 72, unknown 49.2
1848 Female, age 42, unknown 43.7
1890 Male, age 53, unknown 39.0
2097 Female, age 72, unknown 38.2
Median raphe nucleus
nTPM: 39.9
2220 Male, age 76, midline 39.9
Periaquaductal grey, anterior
nTPM: 47.5
1795 Male, age 51, unknown 53.7
1947 Male, age 18, unknown 45.2
2502 Female, age 75, unknown 43.7
Periaquaductal grey, dorsal
nTPM: 50.4
2850 Male, age 76, both hemispheres 57.7
1840 Male, age 53, unknown 53.5
1831 Male, age 72, unknown 46.8
2464 Female, age 72, unknown 43.9
Periaquaductal grey, lateral
nTPM: 54.9
2140 Male, age 76, both hemispheres 57.5
2053 Male, age 18, unknown 53.8
2272 Male, age 74, both hemispheres 53.4
Pretectal area
nTPM: 45.5
2224 Female, age 72, unknown 50.2
2273 Male, age 74, both hemispheres 50.2
1816 Male, age 51, unknown 49.8
1944 Female, age 72, unknown 48.5
2825 Male, age 18, unknown 47.4
2407 Male, age 75, both hemispheres 47.0
2667 Female, age 75, unknown 44.9
2316 Male, age 76, right hemisphere 44.4
1815 Male, age 53, unknown 42.7
2007 Male, age 72, unknown 38.3
1817 Female, age 42, unknown 37.0
Red nucleus
nTPM: 36.8
2584 Male, age 75, left hemisphere 43.7
2588 Male, age 74, left hemisphere 42.0
2725 Female, age 75, unknown 39.7
1904 Male, age 53, unknown 38.2
2769 Male, age 72, unknown 38.1
1865 Male, age 51, unknown 37.6
2227 Male, age 72, unknown 36.8
2823 Male, age 76, right hemisphere 35.6
2503 Female, age 72, unknown 35.3
1954 Female, age 42, unknown 35.1
2785 Male, age 18, unknown 32.9
1821 Female, age 72, unknown 26.2
Substantia nigra
nTPM: 38.2
2665 Male, age 74, both hemispheres 47.0
2590 Female, age 75, unknown 45.9
2583 Male, age 75, right hemisphere 43.0
2699 Male, age 18, unknown 42.2
1941 Male, age 53, unknown 37.4
1889 Female, age 72, unknown 36.5
1851 Male, age 51, unknown 34.9
1916 Female, age 42, unknown 34.2
2241 Male, age 72, unknown 31.2
2409 Female, age 72, unknown 29.7
Superior colliculus
nTPM: 44.5
2664 Male, age 75, both hemispheres 55.7
2261 Male, age 18, unknown 55.2
2087 Female, age 72, unknown 47.7
2587 Male, age 74, left hemisphere 45.4
1995 Male, age 72, unknown 43.1
1796 Male, age 53, unknown 42.5
1895 Male, age 76, right hemisphere 40.7
1839 Male, age 51, unknown 40.2
1913 Female, age 42, unknown 37.9
2668 Female, age 75, unknown 36.5
Ventral tegmental area
nTPM: 39.2
2021 Male, age 53, unknown 49.6
1942 Male, age 51, unknown 40.3
1915 Female, age 42, unknown 38.1
2223 Female, age 72, unknown 37.9
2410 Female, age 72, unknown 36.6
2218 Male, age 76, both hemispheres 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.6
Samples: 139

Max nTPM: 27.2
Min nTPM: 7.8
Std nTPM: 4.5
Median nTPM: 13.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 27.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 27.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 26.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 26.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 25.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 25.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 24.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 23.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 22.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 8.5
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 7.6
Sample C Male 8.5
Sample D Male 7.2
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.4
Sample C Male 9.6
Sample D Male 9.5
Periaqueductal gray
nTPM: 10.5
Samples: 3

Max nTPM: 12.2
Min nTPM: 9.1
Sample B Female 9.1
Sample C Male 12.2
Sample D Male 10.2
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.2
Sample A Female 7.2
Sample B Female 8.6
Sample C Male 8.2
Sample D Male 8.3

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