HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:19.5 nTPM
HPA Brain:58.5 nTPM
GTEx:19.5 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:26.9 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027502Antibody CAB019423
Glial cells Not detectedLow
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 58.5
Sample id Sample description nTPM
Hippocampus
nTPM: 45.7
2621 Female, age 67, right hemisphere 53.6
1898 Male, age 80, left hemisphere 49.6
2529 Female, age 94, left hemisphere 45.7
2148 Female, age 91, left hemisphere 44.7
1855 Male, age 76, left hemisphere 42.7
1911 Female, age 85, right hemisphere 37.8
Dentate gyrus
nTPM: 47.7
2530 Female, age 94, left hemisphere 58.7
2531 Female, age 67, both hemispheres 54.0
2246 Female, age 85, both hemispheres 46.5
2010 Male, age 76, both hemispheres 44.0
1927 Female, age 91, both hemispheres 42.1
2528 Male, age 74, both hemispheres 40.7
Entorhinal gyrus
nTPM: 57.0
2764 Male, age 80, right hemisphere 67.9
2613 Female, age 94, left hemisphere 60.2
1787 Male, age 76, left hemisphere 56.7
1938 Female, age 85, left hemisphere 55.7
2686 Male, age 75, right hemisphere 54.2
2117 Female, age 91, right hemisphere 47.4
Hippocampus, CA1
nTPM: 41.9
2082 Female, age 91, right hemisphere 47.0
1873 Female, age 85, both hemispheres 41.6
2045 Male, age 76, both hemispheres 41.4
2749 Male, age 80, left hemisphere 40.9
2527 Male, age 74, both hemispheres 38.7
Hippocampus, CA2
nTPM: 48.0
1963 Male, age 80, left hemisphere 64.1
2437 Female, age 94, left hemisphere 53.7
1892 Male, age 76, both hemispheres 44.9
2113 Female, age 91, right hemisphere 43.1
1940 Female, age 85, left hemisphere 42.8
2249 Male, age 74, both hemispheres 39.3
Hippocampus, CA3
nTPM: 50.4
2436 Male, age 74, both hemispheres 61.9
2861 Female, age 67, both hemispheres 59.8
2620 Female, age 94, left hemisphere 54.3
1891 Female, age 85, both hemispheres 46.9
1867 Male, age 76, both hemispheres 43.6
2137 Male, age 80, left hemisphere 35.8
Parahippocampal cortex
nTPM: 51.3
1850 Male, age 80, both hemispheres 57.8
1933 Female, age 85, both hemispheres 54.9
2532 Female, age 72, left hemisphere 52.8
2250 Female, age 67, right hemisphere 52.0
1990 Female, age 91, right hemisphere 51.5
2693 Female, age 94, both hemispheres 50.2
2245 Female, age 91, both hemispheres 49.1
2622 Female, age 67, right hemisphere 49.0
2692 Male, age 74, both hemispheres 48.8
2018 Male, age 76, both hemispheres 47.0
Perirhinal gyrus
nTPM: 58.5
1847 Female, age 91, left hemisphere 64.3
2521 Female, age 94, right hemisphere 61.5
1794 Male, age 80, right hemisphere 58.9
1841 Female, age 85, right hemisphere 55.3
2848 Male, age 76, right hemisphere 52.3
Subiculum
nTPM: 45.7
1977 Female, age 85, both hemispheres 53.4
2619 Male, age 74, both hemispheres 48.3
2438 Female, age 94, left hemisphere 46.8
1901 Male, age 80, both hemispheres 43.0
2042 Male, age 76, both hemispheres 42.0
2729 Female, age 91, right hemisphere 40.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.5
Samples: 197

Max nTPM: 46.7
Min nTPM: 11.1
Std nTPM: 5.3
Median nTPM: 18.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 39.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 36.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 36.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 34.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 33.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 32.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 30.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 30.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 30.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 29.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.5
FF:10153-102I9 76 years, female 34.6
FF:10169-103B7 60 years, female 14.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Subiculum
nTPM: 2.9
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 3.3
Sample C Male 2.7
Sample D Male 3.2
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.1
Sample A Female 3.3
Sample B Female 4.3
Sample C Male 3.1
Sample D Male 3.7
Entorhinal cortex
nTPM: 3.2
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.7
Sample A Female 2.8
Sample B Female 2.9
Sample C Male 4.3
Sample D Male 2.7
Ventral hippocampus
nTPM: 3.2
Samples: 4

Max nTPM: 3.5
Min nTPM: 2.8
Sample A Female 2.9
Sample B Female 3.5
Sample C Male 3.4
Sample D Male 2.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.9
Samples: 4

Max nTPM: 29.5
Min nTPM: 20.8
Sample A Male 28.1
Sample B Male 29.5
Sample C Female 20.8
Sample D Female 29.1
Hippocampal formation
nTPM: 15.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 9.2
Sample A Male 20.8
Sample B Male 17.4
Sample C Female 9.2
Sample D Female 16.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
70919555 Antisense, RP_050713_01_E11, Mouse strain C57BL/6J (56 days, male) 0.5
74750075 Antisense, RP_060220_05_F08, Mouse strain C57BL/6J (56 days, male) 0.1
522 Antisense, RP_040304_01_02, Mouse strain C57BL/6J (56 days, male) 0.0
523 Antisense, RP_040304_01_02, Mouse strain C57BL/6J (56 days, male) 0.0

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