MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.2 nTPM
HPA Brain:137.8 nTPM
GTEx:63.2 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:3.5 nTPM
Mouse:16.2 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.5
2586 Male, age 75, left hemisphere 147.3
1830 Male, age 51, unknown 122.5
2019 Male, age 18, unknown 119.7
1833 Male, age 53, unknown 117.4
2411 Female, age 72, unknown 99.7
2666 Male, age 74, left hemisphere 99.5
2828 Female, age 72, unknown 92.1
1870 Female, age 42, unknown 90.2
2219 Male, age 76, both hemispheres 82.6
1827 Male, age 72, unknown 74.2
Dorsal raphe nucleus
nTPM: 72.4
2750 Male, age 76, both hemispheres 102.3
2016 Female, age 72, unknown 86.8
1828 Male, age 53, unknown 68.2
2047 Male, age 72, unknown 54.1
2298 Female, age 72, unknown 50.5
Inferior colliculus
nTPM: 65.7
2849 Male, age 72, unknown 76.0
1890 Male, age 53, unknown 74.8
1848 Female, age 42, unknown 63.3
2097 Female, age 72, unknown 48.7
Median raphe nucleus
nTPM: 58.7
2220 Male, age 76, midline 58.7
Periaquaductal grey, anterior
nTPM: 65.7
2502 Female, age 75, unknown 77.2
1795 Male, age 51, unknown 61.7
1947 Male, age 18, unknown 58.1
Periaquaductal grey, dorsal
nTPM: 59.9
2464 Female, age 72, unknown 77.1
1831 Male, age 72, unknown 58.7
2850 Male, age 76, both hemispheres 57.1
1840 Male, age 53, unknown 46.6
Periaquaductal grey, lateral
nTPM: 62.3
2272 Male, age 74, both hemispheres 65.7
2053 Male, age 18, unknown 64.3
2140 Male, age 76, both hemispheres 56.9
Pretectal area
nTPM: 75.6
2407 Male, age 75, both hemispheres 112.9
1815 Male, age 53, unknown 106.0
2007 Male, age 72, unknown 92.6
2316 Male, age 76, right hemisphere 87.0
1817 Female, age 42, unknown 81.3
2825 Male, age 18, unknown 71.5
1816 Male, age 51, unknown 59.2
2273 Male, age 74, both hemispheres 58.4
1944 Female, age 72, unknown 55.5
2224 Female, age 72, unknown 54.3
2667 Female, age 75, unknown 52.8
Red nucleus
nTPM: 137.8
1904 Male, age 53, unknown 162.5
1865 Male, age 51, unknown 152.7
2785 Male, age 18, unknown 152.5
2823 Male, age 76, right hemisphere 148.8
2503 Female, age 72, unknown 145.7
2584 Male, age 75, left hemisphere 144.3
2588 Male, age 74, left hemisphere 144.0
2769 Male, age 72, unknown 137.3
2227 Male, age 72, unknown 132.2
1821 Female, age 72, unknown 118.7
1954 Female, age 42, unknown 109.9
2725 Female, age 75, unknown 104.4
Substantia nigra
nTPM: 87.1
2583 Male, age 75, right hemisphere 110.4
2699 Male, age 18, unknown 100.2
2590 Female, age 75, unknown 98.1
2409 Female, age 72, unknown 93.5
1851 Male, age 51, unknown 91.1
1889 Female, age 72, unknown 82.5
2665 Male, age 74, both hemispheres 81.9
2241 Male, age 72, unknown 72.9
1941 Male, age 53, unknown 70.6
1916 Female, age 42, unknown 69.4
Superior colliculus
nTPM: 96.3
1995 Male, age 72, unknown 135.1
2668 Female, age 75, unknown 124.3
1913 Female, age 42, unknown 119.9
2664 Male, age 75, both hemispheres 116.1
1895 Male, age 76, right hemisphere 93.5
2587 Male, age 74, left hemisphere 90.1
1839 Male, age 51, unknown 85.1
1796 Male, age 53, unknown 74.7
2261 Male, age 18, unknown 67.7
2087 Female, age 72, unknown 56.6
Ventral tegmental area
nTPM: 80.9
2223 Female, age 72, unknown 101.8
2410 Female, age 72, unknown 99.0
1942 Male, age 51, unknown 79.8
1915 Female, age 42, unknown 76.7
2021 Male, age 53, unknown 68.1
2218 Male, age 76, both hemispheres 60.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.2
Samples: 139

Max nTPM: 196.3
Min nTPM: 20.0
Std nTPM: 30.3
Median nTPM: 55.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 196.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 146.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 141.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 129.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 126.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 123.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 123.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 122.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 120.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 120.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 117.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.9
Samples: 4

Max nTPM: 4.1
Min nTPM: 1.6
Sample A Female 4.1
Sample B Female 2.7
Sample C Male 3.3
Sample D Male 1.6
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.0
Sample A Female 2.7
Sample B Female 3.2
Sample C Male 1.0
Sample D Male 1.6
Periaqueductal gray
nTPM: 3.5
Samples: 3

Max nTPM: 3.8
Min nTPM: 3.3
Sample B Female 3.4
Sample C Male 3.8
Sample D Male 3.3
Superior colliculi
nTPM: 2.6
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.4
Sample A Female 3.0
Sample B Female 3.9
Sample C Male 2.2
Sample D Male 1.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.6
Sample A Male 14.6
Sample B Male 16.6
Sample C Female 17.1
Sample D Female 16.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
71380983 Antisense, RP_050426_02_H07, Mouse strain C57BL/6J (56 days, male) 1.2

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