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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
216.3
nTPM
Monaco:
79.8
nTPM
Schmiedel:
75.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
216.3
HPA sample
nTPM
gdT-cell nTPM: 176.4
Samples: 6
Max nTPM: 253.5
Min nTPM: 100.0
P10809_1007
100.0
P10809_1022
182.5
P10809_1041
253.5
P10809_1060
158.4
P10809_1077
187.8
P10809_1098
175.9
MAIT T-cell nTPM: 165.1
Samples: 6
Max nTPM: 199.4
Min nTPM: 82.4
P10809_1006
82.4
P10809_1024
178.4
P10809_1043
199.4
P10809_1062
164.8
P10809_1083
168.5
P10809_1097
196.9
Memory CD4 T-cell nTPM: 166.1
Samples: 6
Max nTPM: 199.8
Min nTPM: 92.4
P10809_1014
92.4
P10809_1026
199.8
P10809_1045
179.2
P10809_1064
177.7
P10809_1086
169.5
P10809_1113
177.7
Memory CD8 T-cell nTPM: 171.3
Samples: 5
Max nTPM: 215.2
Min nTPM: 89.8
P10809_1012
89.8
P10809_1027
186.5
P10809_1046
215.2
P10809_1065
187.7
P10809_1111
177.5
Naive CD4 T-cell nTPM: 140.5
Samples: 6
Max nTPM: 220.5
Min nTPM: 64.8
P10809_1015
64.8
P10809_1030
164.0
P10809_1049
220.5
P10809_1068
112.7
P10809_1085
150.3
P10809_1112
130.6
Naive CD8 T-cell nTPM: 146.2
Samples: 6
Max nTPM: 179.5
Min nTPM: 81.7
P10809_1016
81.7
P10809_1031
162.0
P10809_1050
168.2
P10809_1069
179.5
P10809_1087
159.4
P10809_1110
126.2
T-reg nTPM: 216.3
Samples: 6
Max nTPM: 301.3
Min nTPM: 131.5
P10809_1018
131.5
P10809_1037
212.5
P10809_1056
301.3
P10809_1075
172.6
P10809_1094
256.3
P10809_1106
223.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
79.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 40.0
Samples: 4
Max nTPM: 60.4
Min nTPM: 26.7
RHH5202_R3573
46.3
RHH5230_R3602
26.7
RHH5259_R3631
26.7
RHH5288_R3660
60.4
Effector memory CD8 T-cell nTPM: 51.2
Samples: 4
Max nTPM: 67.8
Min nTPM: 32.4
RHH5203_R3574
67.8
RHH5231_R3603
63.6
RHH5260_R3632
40.8
RHH5289_R3661
32.4
MAIT T-cell nTPM: 49.4
Samples: 4
Max nTPM: 54.6
Min nTPM: 41.3
RHH5233_R3605
51.5
RHH5205_R3576
41.3
RHH5262_R3634
54.6
RHH5297_R3663
50.3
Memory CD4 T-cell TFH nTPM: 64.4
Samples: 4
Max nTPM: 98.6
Min nTPM: 43.0
RHH5300_R3666
46.9
RHH5236_R3608
98.6
RHH5265_R3637
43.0
RHH5208_R3579
69.0
Memory CD4 T-cell Th1 nTPM: 42.9
Samples: 4
Max nTPM: 56.5
Min nTPM: 32.2
RHH5210_R3581
32.2
RHH5302_R3668
56.5
RHH5238_R3610
45.2
RHH5267_R3639
37.6
Memory CD4 T-cell Th1/Th17 nTPM: 43.6
Samples: 4
Max nTPM: 78.6
Min nTPM: 16.0
RHH5303_R3669
44.9
RHH5211_R3582
78.6
RHH5239_R3611
16.0
RHH5268_R3640
34.8
Memory CD4 T-cell Th17 nTPM: 43.1
Samples: 4
Max nTPM: 86.0
Min nTPM: 25.5
RHH5304_R3670
25.5
RHH5212_R3583
86.0
RHH5240_R3612
30.6
RHH5269_R3641
30.2
Memory CD4 T-cell Th2 nTPM: 53.7
Samples: 4
Max nTPM: 62.2
Min nTPM: 45.5
RHH5305_R3671
46.1
RHH5213_R3584
61.1
RHH5241_R3613
62.2
RHH5270_R3642
45.5
Naive CD4 T-cell nTPM: 37.5
Samples: 4
Max nTPM: 52.2
Min nTPM: 22.9
RHH5306_R3672
22.9
RHH5214_R3585
50.3
RHH5242_R3614
52.2
RHH5271_R3643
24.5
Naive CD8 T-cell nTPM: 33.0
Samples: 4
Max nTPM: 46.5
Min nTPM: 19.3
RHH5201_R3572
46.5
RHH5229_R3601
22.9
RHH5258_R3630
43.4
RHH5287_R3659
19.3
Non-Vd2 gdTCR nTPM: 61.0
Samples: 4
Max nTPM: 91.8
Min nTPM: 31.9
RHH5235_R3607
31.9
RHH5264_R3636
91.8
RHH5207_R3578
62.7
RHH5299_R3665
57.5
T-reg nTPM: 56.1
Samples: 4
Max nTPM: 75.4
Min nTPM: 28.4
RHH5301_R3667
60.3
RHH5237_R3609
75.4
RHH5266_R3638
28.4
RHH5209_R3580
60.3
Terminal effector memory CD4 T-cell nTPM: 38.3
Samples: 2
Max nTPM: 53.1
Min nTPM: 23.5
RHH5243_R3615
23.5
RHH5272_R3644
53.1
Terminal effector memory CD8 T-cell nTPM: 79.8
Samples: 4
Max nTPM: 142.4
Min nTPM: 37.5
RHH5232_R3604
71.1
RHH5204_R3575
142.4
RHH5261_R3633
37.5
RHH5296_R3662
68.1
Vd2 gdTCR nTPM: 63.4
Samples: 4
Max nTPM: 105.3
Min nTPM: 43.3
RHH5234_R3606
43.3
RHH5206_R3577
105.3
RHH5263_R3635
50.8
RHH5298_R3664
54.3
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
