MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA Brain:29.3 nTPM
GTEx:23.5 nTPM
FANTOM5:8.1 Scaled Tags Per Million
Pig:41.8 nTPM
Mouse:24.8 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
2586 Male, age 75, left hemisphere 48.4
2666 Male, age 74, left hemisphere 32.0
1827 Male, age 72, unknown 31.1
2828 Female, age 72, unknown 26.4
2219 Male, age 76, both hemispheres 23.3
2019 Male, age 18, unknown 22.7
2411 Female, age 72, unknown 20.4
1830 Male, age 51, unknown 20.2
1833 Male, age 53, unknown 20.2
1870 Female, age 42, unknown 19.8
Dorsal raphe nucleus
nTPM: 23.6
2298 Female, age 72, unknown 29.4
2047 Male, age 72, unknown 24.4
2016 Female, age 72, unknown 23.4
1828 Male, age 53, unknown 21.8
2750 Male, age 76, both hemispheres 18.8
Inferior colliculus
nTPM: 24.2
2097 Female, age 72, unknown 25.8
2849 Male, age 72, unknown 25.5
1848 Female, age 42, unknown 23.0
1890 Male, age 53, unknown 22.5
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Periaquaductal grey, anterior
nTPM: 29.3
1795 Male, age 51, unknown 31.2
2502 Female, age 75, unknown 28.6
1947 Male, age 18, unknown 28.2
Periaquaductal grey, dorsal
nTPM: 24.0
1840 Male, age 53, unknown 26.1
1831 Male, age 72, unknown 25.8
2850 Male, age 76, both hemispheres 24.7
2464 Female, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 22.3
2053 Male, age 18, unknown 24.9
2272 Male, age 74, both hemispheres 22.6
2140 Male, age 76, both hemispheres 19.5
Pretectal area
nTPM: 28.1
1816 Male, age 51, unknown 37.2
2007 Male, age 72, unknown 35.0
1817 Female, age 42, unknown 34.7
1944 Female, age 72, unknown 34.7
1815 Male, age 53, unknown 28.8
2224 Female, age 72, unknown 26.2
2407 Male, age 75, both hemispheres 25.4
2667 Female, age 75, unknown 25.1
2825 Male, age 18, unknown 23.7
2273 Male, age 74, both hemispheres 22.5
2316 Male, age 76, right hemisphere 16.4
Red nucleus
nTPM: 22.7
2584 Male, age 75, left hemisphere 28.9
2588 Male, age 74, left hemisphere 28.5
2785 Male, age 18, unknown 25.1
1821 Female, age 72, unknown 23.2
2725 Female, age 75, unknown 23.2
1954 Female, age 42, unknown 23.1
1904 Male, age 53, unknown 21.8
2503 Female, age 72, unknown 21.6
2769 Male, age 72, unknown 21.0
1865 Male, age 51, unknown 19.8
2227 Male, age 72, unknown 18.8
2823 Male, age 76, right hemisphere 17.8
Substantia nigra
nTPM: 25.1
1889 Female, age 72, unknown 31.8
2583 Male, age 75, right hemisphere 30.6
1941 Male, age 53, unknown 29.0
2665 Male, age 74, both hemispheres 28.4
1916 Female, age 42, unknown 26.8
2590 Female, age 75, unknown 25.0
1851 Male, age 51, unknown 24.9
2699 Male, age 18, unknown 23.3
2241 Male, age 72, unknown 17.2
2409 Female, age 72, unknown 14.1
Superior colliculus
nTPM: 27.3
2664 Male, age 75, both hemispheres 44.9
1796 Male, age 53, unknown 31.9
2261 Male, age 18, unknown 30.2
2668 Female, age 75, unknown 28.2
1995 Male, age 72, unknown 25.9
2087 Female, age 72, unknown 25.2
1839 Male, age 51, unknown 24.3
1895 Male, age 76, right hemisphere 22.1
2587 Male, age 74, left hemisphere 20.3
1913 Female, age 42, unknown 19.7
Ventral tegmental area
nTPM: 23.6
2223 Female, age 72, unknown 25.6
1942 Male, age 51, unknown 24.9
1915 Female, age 42, unknown 23.7
2218 Male, age 76, both hemispheres 23.3
2410 Female, age 72, unknown 22.6
2021 Male, age 53, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 41.5
Min nTPM: 14.4
Std nTPM: 5.3
Median nTPM: 22.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 41.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 37.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 35.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 35.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 34.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 34.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 31.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.1
FF:10158-103A5 76 years, female 8.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.1
Samples: 4

Max nTPM: 38.9
Min nTPM: 31.6
Sample A Female 36.9
Sample B Female 31.6
Sample C Male 38.9
Sample D Male 33.1
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 45.2
Min nTPM: 32.4
Sample A Female 36.5
Sample B Female 32.4
Sample C Male 45.2
Sample D Male 38.8
Periaqueductal gray
nTPM: 33.8
Samples: 3

Max nTPM: 37.7
Min nTPM: 31.5
Sample B Female 32.2
Sample C Male 37.7
Sample D Male 31.5
Superior colliculi
nTPM: 41.8
Samples: 4

Max nTPM: 44.0
Min nTPM: 35.7
Sample A Female 43.8
Sample B Female 35.7
Sample C Male 44.0
Sample D Male 43.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.6
Sample A Male 27.5
Sample B Male 22.6
Sample C Female 24.5
Sample D Female 24.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
69174553 Antisense, RP_050329_03_A07, Mouse strain C57BL/6J (56 days, male) 2.6

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