HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:42.0 nTPM
GTEx:35.6 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:31.2 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Hippocampus
nTPM: 35.6
2621 Female, age 67, right hemisphere 46.2
1898 Male, age 80, left hemisphere 36.1
2529 Female, age 94, left hemisphere 35.1
1855 Male, age 76, left hemisphere 33.1
2148 Female, age 91, left hemisphere 32.5
1911 Female, age 85, right hemisphere 30.8
Dentate gyrus
nTPM: 32.5
2531 Female, age 67, both hemispheres 40.6
2530 Female, age 94, left hemisphere 36.6
1927 Female, age 91, both hemispheres 33.3
2246 Female, age 85, both hemispheres 29.5
2528 Male, age 74, both hemispheres 28.0
2010 Male, age 76, both hemispheres 26.8
Entorhinal gyrus
nTPM: 36.6
1938 Female, age 85, left hemisphere 43.6
2613 Female, age 94, left hemisphere 42.3
1787 Male, age 76, left hemisphere 37.6
2686 Male, age 75, right hemisphere 34.0
2764 Male, age 80, right hemisphere 33.1
2117 Female, age 91, right hemisphere 29.1
Hippocampus, CA1
nTPM: 35.9
2749 Male, age 80, left hemisphere 45.6
2045 Male, age 76, both hemispheres 37.0
2082 Female, age 91, right hemisphere 33.5
2527 Male, age 74, both hemispheres 32.0
1873 Female, age 85, both hemispheres 31.6
Hippocampus, CA2
nTPM: 32.7
1892 Male, age 76, both hemispheres 38.1
2437 Female, age 94, left hemisphere 33.7
1940 Female, age 85, left hemisphere 33.5
2113 Female, age 91, right hemisphere 32.9
1963 Male, age 80, left hemisphere 30.8
2249 Male, age 74, both hemispheres 27.0
Hippocampus, CA3
nTPM: 37.9
2620 Female, age 94, left hemisphere 49.7
2137 Male, age 80, left hemisphere 45.0
2861 Female, age 67, both hemispheres 44.1
2436 Male, age 74, both hemispheres 34.5
1867 Male, age 76, both hemispheres 29.0
1891 Female, age 85, both hemispheres 25.3
Parahippocampal cortex
nTPM: 35.9
2245 Female, age 91, both hemispheres 41.2
2622 Female, age 67, right hemisphere 39.8
1850 Male, age 80, both hemispheres 38.9
1933 Female, age 85, both hemispheres 37.4
2532 Female, age 72, left hemisphere 36.6
2693 Female, age 94, both hemispheres 35.1
2692 Male, age 74, both hemispheres 34.5
2250 Female, age 67, right hemisphere 33.1
2018 Male, age 76, both hemispheres 31.5
1990 Female, age 91, right hemisphere 31.1
Perirhinal gyrus
nTPM: 42.0
1794 Male, age 80, right hemisphere 46.3
1847 Female, age 91, left hemisphere 45.6
2521 Female, age 94, right hemisphere 39.7
1841 Female, age 85, right hemisphere 39.3
2848 Male, age 76, right hemisphere 39.3
Subiculum
nTPM: 29.1
1977 Female, age 85, both hemispheres 33.3
2619 Male, age 74, both hemispheres 31.9
1901 Male, age 80, both hemispheres 30.1
2438 Female, age 94, left hemisphere 28.0
2729 Female, age 91, right hemisphere 26.4
2042 Male, age 76, both hemispheres 24.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.6
Samples: 197

Max nTPM: 105.4
Min nTPM: 14.5
Std nTPM: 12.8
Median nTPM: 34.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 105.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 70.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 66.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 64.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 62.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 62.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 61.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 60.8
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 58.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 56.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 55.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.8
FF:10153-102I9 76 years, female 14.4
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Subiculum
nTPM: 37.6
Samples: 4

Max nTPM: 48.0
Min nTPM: 31.9
Sample A Female 48.0
Sample B Female 32.4
Sample C Male 37.9
Sample D Male 31.9
Dorsal hippocampus
nTPM: 37.8
Samples: 4

Max nTPM: 44.9
Min nTPM: 31.7
Sample A Female 44.9
Sample B Female 37.8
Sample C Male 36.8
Sample D Male 31.7
Entorhinal cortex
nTPM: 40.9
Samples: 4

Max nTPM: 45.9
Min nTPM: 36.4
Sample A Female 43.7
Sample B Female 36.4
Sample C Male 45.9
Sample D Male 37.6
Ventral hippocampus
nTPM: 39.2
Samples: 4

Max nTPM: 49.4
Min nTPM: 29.6
Sample A Female 34.9
Sample B Female 29.6
Sample C Male 49.4
Sample D Male 42.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 26.2
Sample A Male 26.2
Sample B Male 31.8
Sample C Female 32.4
Sample D Female 28.9
Hippocampal formation
nTPM: 31.3
Samples: 4

Max nTPM: 37.1
Min nTPM: 28.3
Sample A Male 37.1
Sample B Male 28.3
Sample C Female 30.5
Sample D Female 29.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69174553 Antisense, RP_050329_03_A07, Mouse strain C57BL/6J (56 days, male) 3.8

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