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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
42.8
nTPM
Monaco:
21.5
nTPM
Schmiedel:
42.5
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
42.8
HPA sample
nTPM
gdT-cell nTPM: 42.8
Samples: 6
Max nTPM: 66.9
Min nTPM: 27.2
P10809_1007
27.2
P10809_1022
48.1
P10809_1041
66.9
P10809_1060
29.4
P10809_1077
44.6
P10809_1098
40.7
MAIT T-cell nTPM: 35.9
Samples: 6
Max nTPM: 47.5
Min nTPM: 27.6
P10809_1006
27.6
P10809_1024
45.2
P10809_1043
34.5
P10809_1062
29.3
P10809_1083
31.3
P10809_1097
47.5
Memory CD4 T-cell nTPM: 28.6
Samples: 6
Max nTPM: 34.5
Min nTPM: 19.8
P10809_1014
24.6
P10809_1026
34.2
P10809_1045
34.5
P10809_1064
19.8
P10809_1086
27.7
P10809_1113
30.7
Memory CD8 T-cell nTPM: 33.7
Samples: 5
Max nTPM: 46.8
Min nTPM: 27.7
P10809_1012
28.1
P10809_1027
46.8
P10809_1046
30.2
P10809_1065
27.7
P10809_1111
35.5
Naive CD4 T-cell nTPM: 28.1
Samples: 6
Max nTPM: 34.2
Min nTPM: 20.8
P10809_1015
21.5
P10809_1030
32.2
P10809_1049
31.4
P10809_1068
20.8
P10809_1085
34.2
P10809_1112
28.7
Naive CD8 T-cell nTPM: 30.0
Samples: 6
Max nTPM: 40.4
Min nTPM: 21.0
P10809_1016
21.0
P10809_1031
40.4
P10809_1050
28.4
P10809_1069
29.6
P10809_1087
38.0
P10809_1110
22.5
T-reg nTPM: 33.4
Samples: 6
Max nTPM: 47.7
Min nTPM: 24.8
P10809_1018
34.0
P10809_1037
24.8
P10809_1056
25.7
P10809_1075
27.7
P10809_1094
47.7
P10809_1106
40.6
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
21.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 17.9
Samples: 4
Max nTPM: 22.7
Min nTPM: 12.4
RHH5202_R3573
22.7
RHH5230_R3602
14.7
RHH5259_R3631
12.4
RHH5288_R3660
21.9
Effector memory CD8 T-cell nTPM: 18.0
Samples: 4
Max nTPM: 28.6
Min nTPM: 11.0
RHH5203_R3574
28.6
RHH5231_R3603
11.0
RHH5260_R3632
16.1
RHH5289_R3661
16.4
MAIT T-cell nTPM: 18.6
Samples: 4
Max nTPM: 26.7
Min nTPM: 13.3
RHH5233_R3605
26.7
RHH5205_R3576
15.2
RHH5262_R3634
19.1
RHH5297_R3663
13.3
Memory CD4 T-cell TFH nTPM: 19.0
Samples: 4
Max nTPM: 27.0
Min nTPM: 12.3
RHH5300_R3666
21.4
RHH5236_R3608
27.0
RHH5265_R3637
15.1
RHH5208_R3579
12.3
Memory CD4 T-cell Th1 nTPM: 18.1
Samples: 4
Max nTPM: 20.1
Min nTPM: 16.5
RHH5210_R3581
18.5
RHH5302_R3668
20.1
RHH5238_R3610
16.5
RHH5267_R3639
17.2
Memory CD4 T-cell Th1/Th17 nTPM: 16.0
Samples: 4
Max nTPM: 23.3
Min nTPM: 8.9
RHH5303_R3669
20.1
RHH5211_R3582
23.3
RHH5239_R3611
8.9
RHH5268_R3640
11.5
Memory CD4 T-cell Th17 nTPM: 16.1
Samples: 4
Max nTPM: 24.9
Min nTPM: 12.7
RHH5304_R3670
13.5
RHH5212_R3583
24.9
RHH5240_R3612
12.7
RHH5269_R3641
13.2
Memory CD4 T-cell Th2 nTPM: 16.7
Samples: 4
Max nTPM: 22.2
Min nTPM: 11.9
RHH5305_R3671
18.7
RHH5213_R3584
22.2
RHH5241_R3613
13.8
RHH5270_R3642
11.9
Naive CD4 T-cell nTPM: 17.4
Samples: 4
Max nTPM: 27.7
Min nTPM: 9.1
RHH5306_R3672
13.4
RHH5214_R3585
27.7
RHH5242_R3614
9.1
RHH5271_R3643
19.2
Naive CD8 T-cell nTPM: 13.3
Samples: 4
Max nTPM: 18.6
Min nTPM: 6.3
RHH5201_R3572
10.7
RHH5229_R3601
6.3
RHH5258_R3630
18.6
RHH5287_R3659
17.4
Non-Vd2 gdTCR nTPM: 18.4
Samples: 4
Max nTPM: 29.3
Min nTPM: 5.5
RHH5235_R3607
5.5
RHH5264_R3636
29.3
RHH5207_R3578
20.7
RHH5299_R3665
18.0
T-reg nTPM: 20.0
Samples: 4
Max nTPM: 28.8
Min nTPM: 11.9
RHH5301_R3667
23.6
RHH5237_R3609
28.8
RHH5266_R3638
11.9
RHH5209_R3580
15.5
Terminal effector memory CD4 T-cell nTPM: 19.0
Samples: 2
Max nTPM: 27.3
Min nTPM: 10.6
RHH5243_R3615
10.6
RHH5272_R3644
27.3
Terminal effector memory CD8 T-cell nTPM: 19.6
Samples: 4
Max nTPM: 31.9
Min nTPM: 11.4
RHH5232_R3604
17.8
RHH5204_R3575
31.9
RHH5261_R3633
11.4
RHH5296_R3662
17.4
Vd2 gdTCR nTPM: 21.5
Samples: 4
Max nTPM: 35.7
Min nTPM: 13.3
RHH5234_R3606
16.8
RHH5206_R3577
35.7
RHH5263_R3635
13.3
RHH5298_R3664
20.2
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
