MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA Brain:33.4 nTPM
GTEx:12.3 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:18.9 nTPM
Mouse:14.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.6
2828 Female, age 72, unknown 49.4
2586 Male, age 75, left hemisphere 43.7
2666 Male, age 74, left hemisphere 40.7
1827 Male, age 72, unknown 30.5
1833 Male, age 53, unknown 29.8
1870 Female, age 42, unknown 28.2
1830 Male, age 51, unknown 28.1
2019 Male, age 18, unknown 27.0
2219 Male, age 76, both hemispheres 26.4
2411 Female, age 72, unknown 22.5
Dorsal raphe nucleus
nTPM: 29.8
1828 Male, age 53, unknown 35.3
2047 Male, age 72, unknown 32.7
2016 Female, age 72, unknown 31.2
2298 Female, age 72, unknown 25.4
2750 Male, age 76, both hemispheres 24.2
Inferior colliculus
nTPM: 30.0
2849 Male, age 72, unknown 35.7
1848 Female, age 42, unknown 29.6
2097 Female, age 72, unknown 27.3
1890 Male, age 53, unknown 27.2
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 29.6
1795 Male, age 51, unknown 31.0
1947 Male, age 18, unknown 29.4
2502 Female, age 75, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 28.1
2850 Male, age 76, both hemispheres 29.6
1831 Male, age 72, unknown 29.5
1840 Male, age 53, unknown 28.2
2464 Female, age 72, unknown 25.1
Periaquaductal grey, lateral
nTPM: 33.4
2140 Male, age 76, both hemispheres 37.3
2053 Male, age 18, unknown 33.6
2272 Male, age 74, both hemispheres 29.4
Pretectal area
nTPM: 30.1
2825 Male, age 18, unknown 34.7
2316 Male, age 76, right hemisphere 33.7
2273 Male, age 74, both hemispheres 31.8
1817 Female, age 42, unknown 30.2
2407 Male, age 75, both hemispheres 30.2
1944 Female, age 72, unknown 30.1
2667 Female, age 75, unknown 30.0
1815 Male, age 53, unknown 28.9
2224 Female, age 72, unknown 28.1
1816 Male, age 51, unknown 27.1
2007 Male, age 72, unknown 26.3
Red nucleus
nTPM: 32.3
2725 Female, age 75, unknown 40.1
2588 Male, age 74, left hemisphere 36.5
2823 Male, age 76, right hemisphere 35.9
2769 Male, age 72, unknown 35.4
1954 Female, age 42, unknown 33.9
1821 Female, age 72, unknown 33.5
2503 Female, age 72, unknown 32.3
2227 Male, age 72, unknown 31.0
2785 Male, age 18, unknown 29.7
1865 Male, age 51, unknown 27.6
1904 Male, age 53, unknown 26.6
2584 Male, age 75, left hemisphere 24.9
Substantia nigra
nTPM: 30.1
2699 Male, age 18, unknown 37.2
1916 Female, age 42, unknown 36.2
1851 Male, age 51, unknown 33.8
2583 Male, age 75, right hemisphere 32.3
1941 Male, age 53, unknown 31.3
2409 Female, age 72, unknown 27.9
2590 Female, age 75, unknown 27.9
2665 Male, age 74, both hemispheres 27.0
1889 Female, age 72, unknown 24.6
2241 Male, age 72, unknown 23.1
Superior colliculus
nTPM: 30.8
2664 Male, age 75, both hemispheres 38.2
1839 Male, age 51, unknown 33.3
1796 Male, age 53, unknown 32.4
2087 Female, age 72, unknown 31.8
2587 Male, age 74, left hemisphere 31.3
1995 Male, age 72, unknown 31.2
1913 Female, age 42, unknown 29.4
2668 Female, age 75, unknown 27.2
2261 Male, age 18, unknown 26.7
1895 Male, age 76, right hemisphere 26.5
Ventral tegmental area
nTPM: 30.6
1942 Male, age 51, unknown 34.0
1915 Female, age 42, unknown 33.4
2021 Male, age 53, unknown 33.1
2218 Male, age 76, both hemispheres 29.0
2223 Female, age 72, unknown 28.8
2410 Female, age 72, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.3
Samples: 139

Max nTPM: 33.7
Min nTPM: 5.3
Std nTPM: 5.1
Median nTPM: 11.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 28.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 24.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 23.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 22.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 21.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 20.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 22.8
Min nTPM: 14.6
Sample A Female 18.9
Sample B Female 14.6
Sample C Male 22.8
Sample D Male 17.6
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 23.3
Min nTPM: 16.3
Sample A Female 23.3
Sample B Female 16.3
Sample C Male 16.7
Sample D Male 19.2
Periaqueductal gray
nTPM: 16.2
Samples: 3

Max nTPM: 19.2
Min nTPM: 13.9
Sample B Female 15.4
Sample C Male 19.2
Sample D Male 13.9
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 18.8
Min nTPM: 15.5
Sample A Female 18.3
Sample B Female 15.5
Sample C Male 17.2
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.3
Sample A Male 16.3
Sample B Male 13.8
Sample C Female 12.3
Sample D Female 14.6

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