MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.9 nTPM
HPA Brain:41.5 nTPM
GTEx:46.9 nTPM
FANTOM5:12.3 Scaled Tags Per Million
Pig:8.7 nTPM
Mouse:16.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.1
2586 Male, age 75, left hemisphere 60.7
2828 Female, age 72, unknown 48.8
1827 Male, age 72, unknown 45.4
2666 Male, age 74, left hemisphere 39.9
1870 Female, age 42, unknown 39.2
2411 Female, age 72, unknown 37.4
2019 Male, age 18, unknown 36.2
1833 Male, age 53, unknown 33.8
1830 Male, age 51, unknown 31.7
2219 Male, age 76, both hemispheres 27.5
Dorsal raphe nucleus
nTPM: 36.7
2016 Female, age 72, unknown 39.2
2298 Female, age 72, unknown 39.2
2047 Male, age 72, unknown 37.9
1828 Male, age 53, unknown 37.4
2750 Male, age 76, both hemispheres 29.9
Inferior colliculus
nTPM: 37.5
1848 Female, age 42, unknown 40.4
2849 Male, age 72, unknown 39.7
1890 Male, age 53, unknown 35.6
2097 Female, age 72, unknown 34.2
Median raphe nucleus
nTPM: 30.9
2220 Male, age 76, midline 30.9
Periaquaductal grey, anterior
nTPM: 39.7
2502 Female, age 75, unknown 41.7
1795 Male, age 51, unknown 41.0
1947 Male, age 18, unknown 36.2
Periaquaductal grey, dorsal
nTPM: 38.9
1840 Male, age 53, unknown 41.8
1831 Male, age 72, unknown 41.4
2850 Male, age 76, both hemispheres 38.4
2464 Female, age 72, unknown 34.1
Periaquaductal grey, lateral
nTPM: 38.6
2053 Male, age 18, unknown 45.0
2272 Male, age 74, both hemispheres 39.2
2140 Male, age 76, both hemispheres 31.4
Pretectal area
nTPM: 41.5
1816 Male, age 51, unknown 51.5
1944 Female, age 72, unknown 47.5
1817 Female, age 42, unknown 45.7
1815 Male, age 53, unknown 44.3
2667 Female, age 75, unknown 44.3
2007 Male, age 72, unknown 41.9
2273 Male, age 74, both hemispheres 39.5
2825 Male, age 18, unknown 38.1
2407 Male, age 75, both hemispheres 36.9
2224 Female, age 72, unknown 34.2
2316 Male, age 76, right hemisphere 32.1
Red nucleus
nTPM: 38.2
2725 Female, age 75, unknown 43.4
1821 Female, age 72, unknown 41.6
2588 Male, age 74, left hemisphere 40.2
2503 Female, age 72, unknown 39.5
1954 Female, age 42, unknown 38.6
1865 Male, age 51, unknown 38.4
2785 Male, age 18, unknown 37.2
1904 Male, age 53, unknown 37.0
2227 Male, age 72, unknown 37.0
2769 Male, age 72, unknown 36.7
2584 Male, age 75, left hemisphere 36.4
2823 Male, age 76, right hemisphere 32.2
Substantia nigra
nTPM: 35.4
1916 Female, age 42, unknown 44.2
2665 Male, age 74, both hemispheres 40.9
1851 Male, age 51, unknown 36.8
1941 Male, age 53, unknown 36.3
2583 Male, age 75, right hemisphere 36.2
1889 Female, age 72, unknown 36.0
2699 Male, age 18, unknown 34.0
2590 Female, age 75, unknown 32.2
2409 Female, age 72, unknown 31.5
2241 Male, age 72, unknown 26.1
Superior colliculus
nTPM: 40.9
2664 Male, age 75, both hemispheres 52.6
2261 Male, age 18, unknown 46.0
1796 Male, age 53, unknown 43.8
1995 Male, age 72, unknown 41.6
2587 Male, age 74, left hemisphere 41.6
2087 Female, age 72, unknown 40.8
1913 Female, age 42, unknown 40.7
1839 Male, age 51, unknown 37.9
2668 Female, age 75, unknown 34.1
1895 Male, age 76, right hemisphere 29.5
Ventral tegmental area
nTPM: 35.8
2410 Female, age 72, unknown 41.9
1915 Female, age 42, unknown 39.0
1942 Male, age 51, unknown 34.1
2218 Male, age 76, both hemispheres 33.6
2021 Male, age 53, unknown 33.5
2223 Female, age 72, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 88.5
Min nTPM: 23.4
Std nTPM: 10.9
Median nTPM: 45.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 88.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 84.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 80.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 72.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 70.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 69.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 68.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 68.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 66.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 65.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 63.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.3
FF:10158-103A5 76 years, female 12.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.9
Samples: 4

Max nTPM: 8.0
Min nTPM: 7.6
Sample A Female 8.0
Sample B Female 7.6
Sample C Male 7.9
Sample D Male 7.9
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 12.9
Min nTPM: 5.7
Sample A Female 12.9
Sample B Female 7.4
Sample C Male 5.7
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.6
Sample B Female 6.6
Sample C Male 8.0
Sample D Male 7.4
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.5
Sample A Female 9.4
Sample B Female 10.2
Sample C Male 7.5
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 15.0
Sample A Male 18.1
Sample B Male 15.0
Sample C Female 15.6
Sample D Female 16.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
67979050 Antisense, RP_040923_02_C11, Mouse strain C57BL/6J (56 days, male) 0.1

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