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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.8
nTPM
Monaco:
74.7
nTPM
Schmiedel:
186.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
71.8
HPA sample
nTPM
gdT-cell nTPM: 43.5
Samples: 6
Max nTPM: 64.3
Min nTPM: 27.0
P10809_1007
27.0
P10809_1022
55.9
P10809_1041
64.3
P10809_1060
37.7
P10809_1077
35.2
P10809_1098
41.1
MAIT T-cell nTPM: 67.0
Samples: 6
Max nTPM: 102.3
Min nTPM: 44.5
P10809_1006
44.5
P10809_1024
102.3
P10809_1043
80.5
P10809_1062
57.8
P10809_1083
54.3
P10809_1097
62.7
Memory CD4 T-cell nTPM: 53.6
Samples: 6
Max nTPM: 79.0
Min nTPM: 41.1
P10809_1014
43.0
P10809_1026
79.0
P10809_1045
56.4
P10809_1064
41.1
P10809_1086
43.8
P10809_1113
58.4
Memory CD8 T-cell nTPM: 45.4
Samples: 5
Max nTPM: 61.6
Min nTPM: 32.9
P10809_1012
32.9
P10809_1027
46.4
P10809_1046
61.6
P10809_1065
39.6
P10809_1111
46.6
Naive CD4 T-cell nTPM: 71.8
Samples: 6
Max nTPM: 94.6
Min nTPM: 45.9
P10809_1015
45.9
P10809_1030
69.1
P10809_1049
94.6
P10809_1068
74.5
P10809_1085
61.4
P10809_1112
85.1
Naive CD8 T-cell nTPM: 53.8
Samples: 6
Max nTPM: 74.1
Min nTPM: 30.0
P10809_1016
40.9
P10809_1031
74.1
P10809_1050
54.0
P10809_1069
62.9
P10809_1087
30.0
P10809_1110
60.8
T-reg nTPM: 46.6
Samples: 6
Max nTPM: 61.0
Min nTPM: 33.1
P10809_1018
37.5
P10809_1037
48.7
P10809_1056
60.4
P10809_1075
33.1
P10809_1094
61.0
P10809_1106
38.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
74.7
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 38.4
Samples: 4
Max nTPM: 56.4
Min nTPM: 23.5
RHH5202_R3573
23.5
RHH5230_R3602
42.8
RHH5259_R3631
30.7
RHH5288_R3660
56.4
Effector memory CD8 T-cell nTPM: 41.2
Samples: 4
Max nTPM: 54.3
Min nTPM: 29.4
RHH5203_R3574
49.6
RHH5231_R3603
31.4
RHH5260_R3632
29.4
RHH5289_R3661
54.3
MAIT T-cell nTPM: 67.4
Samples: 4
Max nTPM: 73.0
Min nTPM: 56.9
RHH5233_R3605
56.9
RHH5205_R3576
69.5
RHH5262_R3634
73.0
RHH5297_R3663
70.0
Memory CD4 T-cell TFH nTPM: 66.4
Samples: 4
Max nTPM: 76.5
Min nTPM: 58.9
RHH5300_R3666
58.9
RHH5236_R3608
76.5
RHH5265_R3637
61.6
RHH5208_R3579
68.4
Memory CD4 T-cell Th1 nTPM: 39.8
Samples: 4
Max nTPM: 50.7
Min nTPM: 28.6
RHH5210_R3581
41.1
RHH5302_R3668
50.7
RHH5238_R3610
28.6
RHH5267_R3639
38.9
Memory CD4 T-cell Th1/Th17 nTPM: 57.4
Samples: 4
Max nTPM: 78.9
Min nTPM: 27.1
RHH5303_R3669
78.9
RHH5211_R3582
78.0
RHH5239_R3611
27.1
RHH5268_R3640
45.6
Memory CD4 T-cell Th17 nTPM: 59.6
Samples: 4
Max nTPM: 71.0
Min nTPM: 48.7
RHH5304_R3670
57.3
RHH5212_R3583
61.4
RHH5240_R3612
71.0
RHH5269_R3641
48.7
Memory CD4 T-cell Th2 nTPM: 56.9
Samples: 4
Max nTPM: 61.7
Min nTPM: 48.5
RHH5305_R3671
48.5
RHH5213_R3584
59.4
RHH5241_R3613
57.9
RHH5270_R3642
61.7
Naive CD4 T-cell nTPM: 74.7
Samples: 4
Max nTPM: 90.2
Min nTPM: 57.8
RHH5306_R3672
57.8
RHH5214_R3585
78.3
RHH5242_R3614
72.5
RHH5271_R3643
90.2
Naive CD8 T-cell nTPM: 64.1
Samples: 4
Max nTPM: 93.4
Min nTPM: 25.7
RHH5201_R3572
72.2
RHH5229_R3601
25.7
RHH5258_R3630
93.4
RHH5287_R3659
65.2
Non-Vd2 gdTCR nTPM: 44.4
Samples: 4
Max nTPM: 49.6
Min nTPM: 40.0
RHH5235_R3607
44.3
RHH5264_R3636
49.6
RHH5207_R3578
43.8
RHH5299_R3665
40.0
T-reg nTPM: 60.2
Samples: 4
Max nTPM: 63.8
Min nTPM: 54.9
RHH5301_R3667
59.4
RHH5237_R3609
63.8
RHH5266_R3638
62.5
RHH5209_R3580
54.9
Terminal effector memory CD4 T-cell nTPM: 37.2
Samples: 2
Max nTPM: 43.1
Min nTPM: 31.2
RHH5243_R3615
31.2
RHH5272_R3644
43.1
Terminal effector memory CD8 T-cell nTPM: 34.9
Samples: 4
Max nTPM: 41.2
Min nTPM: 31.6
RHH5232_R3604
34.4
RHH5204_R3575
32.5
RHH5261_R3633
31.6
RHH5296_R3662
41.2
Vd2 gdTCR nTPM: 48.2
Samples: 4
Max nTPM: 55.0
Min nTPM: 43.1
RHH5234_R3606
55.0
RHH5206_R3577
47.3
RHH5263_R3635
47.4
RHH5298_R3664
43.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
