HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:62.5 nTPM
HPA Brain:127.0 nTPM
GTEx:62.5 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:25.3 nTPM
Mouse:40.3 nTPM
Allen mouse:9.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020430Antibody CAB020767
Glial cells MediumNot detected
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 127.0
Sample id Sample description nTPM
Hippocampus
nTPM: 109.7
2529 Female, age 94, left hemisphere 123.6
2621 Female, age 67, right hemisphere 115.4
1898 Male, age 80, left hemisphere 114.5
2148 Female, age 91, left hemisphere 108.1
1855 Male, age 76, left hemisphere 103.6
1911 Female, age 85, right hemisphere 92.9
Dentate gyrus
nTPM: 102.3
2530 Female, age 94, left hemisphere 132.0
2531 Female, age 67, both hemispheres 103.8
2010 Male, age 76, both hemispheres 101.8
2528 Male, age 74, both hemispheres 100.8
1927 Female, age 91, both hemispheres 89.0
2246 Female, age 85, both hemispheres 86.6
Entorhinal gyrus
nTPM: 127.0
2764 Male, age 80, right hemisphere 134.2
2117 Female, age 91, right hemisphere 131.8
1787 Male, age 76, left hemisphere 128.1
2686 Male, age 75, right hemisphere 126.0
2613 Female, age 94, left hemisphere 124.9
1938 Female, age 85, left hemisphere 116.7
Hippocampus, CA1
nTPM: 89.4
1873 Female, age 85, both hemispheres 97.1
2082 Female, age 91, right hemisphere 94.1
2749 Male, age 80, left hemisphere 89.3
2527 Male, age 74, both hemispheres 88.5
2045 Male, age 76, both hemispheres 78.0
Hippocampus, CA2
nTPM: 101.1
2437 Female, age 94, left hemisphere 121.3
1963 Male, age 80, left hemisphere 104.8
1892 Male, age 76, both hemispheres 100.4
1940 Female, age 85, left hemisphere 98.3
2113 Female, age 91, right hemisphere 96.4
2249 Male, age 74, both hemispheres 85.5
Hippocampus, CA3
nTPM: 91.6
2861 Female, age 67, both hemispheres 112.5
1891 Female, age 85, both hemispheres 100.5
1867 Male, age 76, both hemispheres 97.8
2620 Female, age 94, left hemisphere 89.0
2137 Male, age 80, left hemisphere 80.2
2436 Male, age 74, both hemispheres 69.6
Parahippocampal cortex
nTPM: 108.1
2692 Male, age 74, both hemispheres 126.4
2532 Female, age 72, left hemisphere 120.8
2622 Female, age 67, right hemisphere 116.9
1990 Female, age 91, right hemisphere 110.7
1850 Male, age 80, both hemispheres 109.7
2245 Female, age 91, both hemispheres 107.0
1933 Female, age 85, both hemispheres 103.4
2693 Female, age 94, both hemispheres 98.3
2018 Male, age 76, both hemispheres 94.4
2250 Female, age 67, right hemisphere 93.8
Perirhinal gyrus
nTPM: 101.7
1794 Male, age 80, right hemisphere 110.5
2848 Male, age 76, right hemisphere 106.6
1847 Female, age 91, left hemisphere 106.5
1841 Female, age 85, right hemisphere 94.1
2521 Female, age 94, right hemisphere 90.7
Subiculum
nTPM: 117.8
2438 Female, age 94, left hemisphere 145.6
2042 Male, age 76, both hemispheres 124.1
1901 Male, age 80, both hemispheres 115.7
2619 Male, age 74, both hemispheres 112.7
1977 Female, age 85, both hemispheres 110.1
2729 Female, age 91, right hemisphere 98.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 62.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 62.5
Samples: 197

Max nTPM: 126.9
Min nTPM: 22.9
Std nTPM: 18.5
Median nTPM: 57.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 126.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 115.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 114.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 112.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 111.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 104.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 104.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 104.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 102.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 102.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 99.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.4
FF:10153-102I9 76 years, female 66.5
FF:10169-103B7 60 years, female 38.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.3
Pig sample Sample description nTPM
Subiculum
nTPM: 24.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 20.5
Sample A Female 31.1
Sample B Female 22.6
Sample C Male 24.4
Sample D Male 20.5
Dorsal hippocampus
nTPM: 20.6
Samples: 4

Max nTPM: 24.9
Min nTPM: 14.4
Sample A Female 24.9
Sample B Female 21.4
Sample C Male 21.5
Sample D Male 14.4
Entorhinal cortex
nTPM: 25.4
Samples: 4

Max nTPM: 29.3
Min nTPM: 21.0
Sample A Female 27.0
Sample B Female 21.0
Sample C Male 29.3
Sample D Male 24.1
Ventral hippocampus
nTPM: 22.9
Samples: 4

Max nTPM: 31.4
Min nTPM: 17.7
Sample A Female 22.6
Sample B Female 17.7
Sample C Male 31.4
Sample D Male 19.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.3
Samples: 4

Max nTPM: 45.1
Min nTPM: 36.8
Sample A Male 39.0
Sample B Male 40.1
Sample C Female 36.8
Sample D Female 45.1
Hippocampal formation
nTPM: 37.6
Samples: 4

Max nTPM: 40.8
Min nTPM: 30.2
Sample A Male 30.2
Sample B Male 40.6
Sample C Female 40.8
Sample D Female 38.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.7
67764933 Antisense, RP_040916_02_E11, Mouse strain C57BL/6J (56 days, male) 9.7
2137 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 9.6
2138 Antisense, RP_Baylor_103408, Mouse strain C57BL/6J (56 days, male) 6.8

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