HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:12.6 nTPM
HPA Brain:36.2 nTPM
GTEx:12.6 nTPM
FANTOM5:28.3 Scaled Tags Per Million
Pig:35.0 nTPM
Mouse:90.9 nTPM
Allen mouse:14.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA062356
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Hippocampus
nTPM: 30.3
1898 Male, age 80, left hemisphere 33.5
1855 Male, age 76, left hemisphere 32.0
2621 Female, age 67, right hemisphere 30.3
2148 Female, age 91, left hemisphere 29.8
1911 Female, age 85, right hemisphere 28.9
2529 Female, age 94, left hemisphere 27.2
Dentate gyrus
nTPM: 32.0
1927 Female, age 91, both hemispheres 44.0
2531 Female, age 67, both hemispheres 39.0
2010 Male, age 76, both hemispheres 31.9
2246 Female, age 85, both hemispheres 27.5
2528 Male, age 74, both hemispheres 26.1
2530 Female, age 94, left hemisphere 23.5
Entorhinal gyrus
nTPM: 25.5
2686 Male, age 75, right hemisphere 31.0
2613 Female, age 94, left hemisphere 28.5
1938 Female, age 85, left hemisphere 25.7
2764 Male, age 80, right hemisphere 25.7
1787 Male, age 76, left hemisphere 24.3
2117 Female, age 91, right hemisphere 17.8
Hippocampus, CA1
nTPM: 36.2
2749 Male, age 80, left hemisphere 47.4
2045 Male, age 76, both hemispheres 44.6
1873 Female, age 85, both hemispheres 33.0
2527 Male, age 74, both hemispheres 29.0
2082 Female, age 91, right hemisphere 27.2
Hippocampus, CA2
nTPM: 28.6
1892 Male, age 76, both hemispheres 37.7
1963 Male, age 80, left hemisphere 32.5
2249 Male, age 74, both hemispheres 29.0
2437 Female, age 94, left hemisphere 25.7
2113 Female, age 91, right hemisphere 25.5
1940 Female, age 85, left hemisphere 21.0
Hippocampus, CA3
nTPM: 35.7
2137 Male, age 80, left hemisphere 42.6
2620 Female, age 94, left hemisphere 42.4
1867 Male, age 76, both hemispheres 36.6
2861 Female, age 67, both hemispheres 36.5
2436 Male, age 74, both hemispheres 30.0
1891 Female, age 85, both hemispheres 26.4
Parahippocampal cortex
nTPM: 26.6
1933 Female, age 85, both hemispheres 29.7
1850 Male, age 80, both hemispheres 29.6
2245 Female, age 91, both hemispheres 28.1
2693 Female, age 94, both hemispheres 28.0
2250 Female, age 67, right hemisphere 27.4
1990 Female, age 91, right hemisphere 26.1
2018 Male, age 76, both hemispheres 24.6
2622 Female, age 67, right hemisphere 24.5
2532 Female, age 72, left hemisphere 24.2
2692 Male, age 74, both hemispheres 23.9
Perirhinal gyrus
nTPM: 29.8
1847 Female, age 91, left hemisphere 36.5
1841 Female, age 85, right hemisphere 30.2
2521 Female, age 94, right hemisphere 28.4
1794 Male, age 80, right hemisphere 28.1
2848 Male, age 76, right hemisphere 25.7
Subiculum
nTPM: 24.3
2619 Male, age 74, both hemispheres 26.9
2729 Female, age 91, right hemisphere 26.8
1977 Female, age 85, both hemispheres 25.9
1901 Male, age 80, both hemispheres 25.7
2438 Female, age 94, left hemisphere 22.8
2042 Male, age 76, both hemispheres 17.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.6
Samples: 197

Max nTPM: 28.2
Min nTPM: 4.2
Std nTPM: 4.1
Median nTPM: 12.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 28.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 23.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 23.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 22.8
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 22.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 22.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 21.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 21.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 20.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 20.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 20.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.3
FF:10169-103B7 60 years, female 34.2
FF:10153-102I9 76 years, female 22.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.0
Pig sample Sample description nTPM
Subiculum
nTPM: 20.0
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.3
Sample A Female 21.7
Sample B Female 18.5
Sample C Male 21.4
Sample D Male 18.3
Dorsal hippocampus
nTPM: 35.0
Samples: 4

Max nTPM: 39.3
Min nTPM: 30.3
Sample A Female 39.3
Sample B Female 37.3
Sample C Male 30.3
Sample D Male 32.9
Entorhinal cortex
nTPM: 23.9
Samples: 4

Max nTPM: 25.7
Min nTPM: 20.1
Sample A Female 25.7
Sample B Female 24.5
Sample C Male 25.3
Sample D Male 20.1
Ventral hippocampus
nTPM: 29.1
Samples: 4

Max nTPM: 34.7
Min nTPM: 23.1
Sample A Female 34.7
Sample B Female 23.1
Sample C Male 27.0
Sample D Male 31.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 90.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.5
Samples: 4

Max nTPM: 76.4
Min nTPM: 58.4
Sample A Male 61.8
Sample B Male 58.4
Sample C Female 69.5
Sample D Female 76.4
Hippocampal formation
nTPM: 90.9
Samples: 4

Max nTPM: 108.3
Min nTPM: 74.2
Sample A Male 74.2
Sample B Male 99.5
Sample C Female 108.3
Sample D Female 81.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.7
71836888 Antisense, RP_051017_02_F06, Mouse strain C57BL/6J (56 days, male) 17.8
68743865 Antisense, RP_050203_01_G05, Mouse strain C57BL/6J (56 days, male) 11.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org