MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA Brain:30.7 nTPM
GTEx:35.2 nTPM
FANTOM5:66.5 Scaled Tags Per Million
Pig:36.2 nTPM
Mouse:9.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.8
2828 Female, age 72, unknown 34.8
2586 Male, age 75, left hemisphere 29.6
1833 Male, age 53, unknown 27.7
1870 Female, age 42, unknown 27.3
2666 Male, age 74, left hemisphere 27.1
1830 Male, age 51, unknown 27.0
2019 Male, age 18, unknown 25.3
2411 Female, age 72, unknown 24.8
1827 Male, age 72, unknown 24.5
2219 Male, age 76, both hemispheres 20.1
Dorsal raphe nucleus
nTPM: 26.3
2016 Female, age 72, unknown 32.7
1828 Male, age 53, unknown 28.8
2298 Female, age 72, unknown 23.8
2047 Male, age 72, unknown 23.2
2750 Male, age 76, both hemispheres 22.9
Inferior colliculus
nTPM: 24.1
1890 Male, age 53, unknown 25.3
1848 Female, age 42, unknown 24.8
2849 Male, age 72, unknown 24.2
2097 Female, age 72, unknown 22.1
Median raphe nucleus
nTPM: 20.6
2220 Male, age 76, midline 20.6
Periaquaductal grey, anterior
nTPM: 25.2
2502 Female, age 75, unknown 30.7
1795 Male, age 51, unknown 24.2
1947 Male, age 18, unknown 20.7
Periaquaductal grey, dorsal
nTPM: 25.7
2850 Male, age 76, both hemispheres 31.4
1831 Male, age 72, unknown 24.9
1840 Male, age 53, unknown 23.2
2464 Female, age 72, unknown 23.0
Periaquaductal grey, lateral
nTPM: 27.7
2140 Male, age 76, both hemispheres 34.7
2053 Male, age 18, unknown 26.7
2272 Male, age 74, both hemispheres 21.7
Pretectal area
nTPM: 26.4
2316 Male, age 76, right hemisphere 31.6
1817 Female, age 42, unknown 29.4
1815 Male, age 53, unknown 28.9
2667 Female, age 75, unknown 28.9
2007 Male, age 72, unknown 26.6
2825 Male, age 18, unknown 26.6
2273 Male, age 74, both hemispheres 26.2
2407 Male, age 75, both hemispheres 24.8
2224 Female, age 72, unknown 23.9
1944 Female, age 72, unknown 21.8
1816 Male, age 51, unknown 21.4
Red nucleus
nTPM: 30.7
1821 Female, age 72, unknown 37.1
2503 Female, age 72, unknown 36.3
2769 Male, age 72, unknown 33.3
1904 Male, age 53, unknown 33.2
1865 Male, age 51, unknown 32.5
2785 Male, age 18, unknown 31.0
2588 Male, age 74, left hemisphere 30.6
2227 Male, age 72, unknown 29.5
1954 Female, age 42, unknown 29.0
2823 Male, age 76, right hemisphere 25.7
2725 Female, age 75, unknown 25.4
2584 Male, age 75, left hemisphere 24.9
Substantia nigra
nTPM: 26.9
2699 Male, age 18, unknown 38.4
1851 Male, age 51, unknown 30.7
2590 Female, age 75, unknown 28.3
2665 Male, age 74, both hemispheres 27.5
1889 Female, age 72, unknown 26.7
1916 Female, age 42, unknown 26.3
2583 Male, age 75, right hemisphere 26.0
2409 Female, age 72, unknown 23.0
2241 Male, age 72, unknown 22.8
1941 Male, age 53, unknown 18.9
Superior colliculus
nTPM: 28.5
1995 Male, age 72, unknown 37.7
1913 Female, age 42, unknown 31.5
2664 Male, age 75, both hemispheres 30.7
1895 Male, age 76, right hemisphere 29.0
2587 Male, age 74, left hemisphere 28.7
1839 Male, age 51, unknown 28.1
1796 Male, age 53, unknown 27.3
2087 Female, age 72, unknown 24.3
2261 Male, age 18, unknown 24.2
2668 Female, age 75, unknown 23.3
Ventral tegmental area
nTPM: 26.9
2410 Female, age 72, unknown 29.9
2021 Male, age 53, unknown 28.9
1915 Female, age 42, unknown 27.3
2223 Female, age 72, unknown 27.0
1942 Male, age 51, unknown 26.9
2218 Male, age 76, both hemispheres 21.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 62.2
Min nTPM: 10.9
Std nTPM: 11.4
Median nTPM: 33.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 62.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 61.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 61.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 59.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 58.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 57.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 56.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 55.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 54.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 53.6
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 53.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.5
FF:10158-103A5 76 years, female 66.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 41.4
Min nTPM: 25.6
Sample A Female 26.1
Sample B Female 41.4
Sample C Male 25.6
Sample D Male 36.5
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 40.1
Min nTPM: 18.8
Sample A Female 40.1
Sample B Female 31.1
Sample C Male 29.2
Sample D Male 18.8
Periaqueductal gray
nTPM: 24.6
Samples: 3

Max nTPM: 30.3
Min nTPM: 20.8
Sample B Female 30.3
Sample C Male 20.8
Sample D Male 22.6
Superior colliculi
nTPM: 36.2
Samples: 4

Max nTPM: 55.0
Min nTPM: 29.2
Sample A Female 31.0
Sample B Female 55.0
Sample C Male 29.5
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.8
Sample A Male 8.6
Sample B Male 7.8
Sample C Female 9.5
Sample D Female 10.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
77790716 Antisense, RP_070208_04_A08, Mouse strain C57BL/6J (56 days, male) 0.3
69133686 Antisense, RP_050321_02_A10, Mouse strain C57BL/6J (56 days, male) 0.2

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