MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:37.7 nTPM
GTEx:17.0 nTPM
FANTOM5:25.7 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:12.6 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
2586 Male, age 75, left hemisphere 51.6
2019 Male, age 18, unknown 42.9
2666 Male, age 74, left hemisphere 36.7
2828 Female, age 72, unknown 36.5
1827 Male, age 72, unknown 31.6
2411 Female, age 72, unknown 24.3
1870 Female, age 42, unknown 24.1
1833 Male, age 53, unknown 20.8
1830 Male, age 51, unknown 19.9
2219 Male, age 76, both hemispheres 19.4
Dorsal raphe nucleus
nTPM: 23.7
2298 Female, age 72, unknown 26.6
2047 Male, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 24.1
1828 Male, age 53, unknown 22.1
2016 Female, age 72, unknown 21.4
Inferior colliculus
nTPM: 22.3
2097 Female, age 72, unknown 25.5
1890 Male, age 53, unknown 24.8
2849 Male, age 72, unknown 20.3
1848 Female, age 42, unknown 18.7
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 34.0
1795 Male, age 51, unknown 40.4
2502 Female, age 75, unknown 32.9
1947 Male, age 18, unknown 28.5
Periaquaductal grey, dorsal
nTPM: 25.3
1840 Male, age 53, unknown 28.9
2464 Female, age 72, unknown 26.5
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 21.7
Periaquaductal grey, lateral
nTPM: 21.5
2140 Male, age 76, both hemispheres 25.9
2272 Male, age 74, both hemispheres 19.4
2053 Male, age 18, unknown 19.2
Pretectal area
nTPM: 37.7
1944 Female, age 72, unknown 60.6
2007 Male, age 72, unknown 58.4
1816 Male, age 51, unknown 54.5
1817 Female, age 42, unknown 50.2
1815 Male, age 53, unknown 40.0
2667 Female, age 75, unknown 33.5
2407 Male, age 75, both hemispheres 26.2
2825 Male, age 18, unknown 24.2
2224 Female, age 72, unknown 22.8
2316 Male, age 76, right hemisphere 22.5
2273 Male, age 74, both hemispheres 21.6
Red nucleus
nTPM: 25.3
2785 Male, age 18, unknown 44.6
2584 Male, age 75, left hemisphere 34.8
2588 Male, age 74, left hemisphere 27.3
1904 Male, age 53, unknown 23.8
2503 Female, age 72, unknown 23.8
2769 Male, age 72, unknown 23.7
2725 Female, age 75, unknown 22.7
2227 Male, age 72, unknown 22.5
1954 Female, age 42, unknown 21.9
1865 Male, age 51, unknown 20.6
1821 Female, age 72, unknown 19.7
2823 Male, age 76, right hemisphere 18.1
Substantia nigra
nTPM: 30.9
1889 Female, age 72, unknown 41.8
2665 Male, age 74, both hemispheres 39.3
1916 Female, age 42, unknown 33.9
2583 Male, age 75, right hemisphere 31.9
1851 Male, age 51, unknown 31.2
2409 Female, age 72, unknown 31.0
1941 Male, age 53, unknown 29.4
2590 Female, age 75, unknown 29.3
2241 Male, age 72, unknown 23.9
2699 Male, age 18, unknown 17.2
Superior colliculus
nTPM: 32.2
2664 Male, age 75, both hemispheres 42.2
2087 Female, age 72, unknown 42.0
2261 Male, age 18, unknown 38.2
2668 Female, age 75, unknown 37.0
1796 Male, age 53, unknown 36.9
1913 Female, age 42, unknown 27.7
1995 Male, age 72, unknown 26.9
1839 Male, age 51, unknown 24.3
1895 Male, age 76, right hemisphere 23.4
2587 Male, age 74, left hemisphere 23.3
Ventral tegmental area
nTPM: 25.3
1915 Female, age 42, unknown 28.8
1942 Male, age 51, unknown 28.7
2410 Female, age 72, unknown 24.9
2218 Male, age 76, both hemispheres 23.9
2021 Male, age 53, unknown 23.0
2223 Female, age 72, unknown 22.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 33.5
Min nTPM: 7.0
Std nTPM: 4.7
Median nTPM: 16.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 33.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 32.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 24.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 24.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 24.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 24.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 24.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.7
FF:10158-103A5 76 years, female 25.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.8
Samples: 4

Max nTPM: 34.2
Min nTPM: 25.2
Sample A Female 29.1
Sample B Female 25.2
Sample C Male 34.2
Sample D Male 26.5
Midbrain
nTPM: 31.7
Samples: 4

Max nTPM: 45.7
Min nTPM: 23.6
Sample A Female 27.7
Sample B Female 23.6
Sample C Male 45.7
Sample D Male 29.9
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 29.0
Min nTPM: 22.4
Sample B Female 22.4
Sample C Male 29.0
Sample D Male 25.0
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 40.0
Min nTPM: 29.4
Sample A Female 32.3
Sample B Female 29.4
Sample C Male 40.0
Sample D Male 34.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.6
Samples: 4

Max nTPM: 13.2
Min nTPM: 12.0
Sample A Male 12.7
Sample B Male 12.6
Sample C Female 13.2
Sample D Female 12.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69980268 Antisense, RP_050512_04_B12, Mouse strain C57BL/6J (56 days, male) 1.3

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