MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:407.7 nTPM
HPA Brain:195.0 nTPM
GTEx:407.7 nTPM
FANTOM5:310.6 Scaled Tags Per Million
Pig:101.7 nTPM
Mouse:123.2 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 195.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 149.4
1870 Female, age 42, unknown 164.0
1827 Male, age 72, unknown 162.5
2586 Male, age 75, left hemisphere 156.6
2666 Male, age 74, left hemisphere 153.7
2219 Male, age 76, both hemispheres 150.7
2019 Male, age 18, unknown 144.9
2828 Female, age 72, unknown 143.2
1830 Male, age 51, unknown 141.5
1833 Male, age 53, unknown 139.9
2411 Female, age 72, unknown 137.5
Dorsal raphe nucleus
nTPM: 148.4
2047 Male, age 72, unknown 162.1
1828 Male, age 53, unknown 155.8
2750 Male, age 76, both hemispheres 152.8
2298 Female, age 72, unknown 148.5
2016 Female, age 72, unknown 122.9
Inferior colliculus
nTPM: 149.3
2849 Male, age 72, unknown 167.0
1890 Male, age 53, unknown 145.6
1848 Female, age 42, unknown 143.0
2097 Female, age 72, unknown 141.8
Median raphe nucleus
nTPM: 195.0
2220 Male, age 76, midline 195.0
Periaquaductal grey, anterior
nTPM: 149.2
1795 Male, age 51, unknown 158.2
1947 Male, age 18, unknown 150.3
2502 Female, age 75, unknown 139.0
Periaquaductal grey, dorsal
nTPM: 138.6
2850 Male, age 76, both hemispheres 176.7
1840 Male, age 53, unknown 138.1
1831 Male, age 72, unknown 131.1
2464 Female, age 72, unknown 108.4
Periaquaductal grey, lateral
nTPM: 136.4
2140 Male, age 76, both hemispheres 147.3
2053 Male, age 18, unknown 135.1
2272 Male, age 74, both hemispheres 126.6
Pretectal area
nTPM: 161.8
1817 Female, age 42, unknown 194.3
1816 Male, age 51, unknown 180.6
2007 Male, age 72, unknown 178.1
1944 Female, age 72, unknown 177.7
2667 Female, age 75, unknown 169.2
2407 Male, age 75, both hemispheres 168.1
1815 Male, age 53, unknown 162.3
2825 Male, age 18, unknown 146.5
2224 Female, age 72, unknown 143.8
2273 Male, age 74, both hemispheres 135.2
2316 Male, age 76, right hemisphere 123.4
Red nucleus
nTPM: 161.7
2725 Female, age 75, unknown 179.6
1865 Male, age 51, unknown 172.9
1821 Female, age 72, unknown 172.8
2584 Male, age 75, left hemisphere 168.8
2785 Male, age 18, unknown 163.3
2769 Male, age 72, unknown 160.4
1904 Male, age 53, unknown 160.2
2503 Female, age 72, unknown 157.8
2227 Male, age 72, unknown 156.2
1954 Female, age 42, unknown 151.9
2588 Male, age 74, left hemisphere 150.0
2823 Male, age 76, right hemisphere 147.0
Substantia nigra
nTPM: 166.4
1916 Female, age 42, unknown 223.7
2699 Male, age 18, unknown 192.0
1851 Male, age 51, unknown 180.1
1889 Female, age 72, unknown 179.2
1941 Male, age 53, unknown 174.4
2665 Male, age 74, both hemispheres 169.3
2409 Female, age 72, unknown 153.7
2583 Male, age 75, right hemisphere 132.1
2590 Female, age 75, unknown 130.4
2241 Male, age 72, unknown 129.2
Superior colliculus
nTPM: 152.4
2587 Male, age 74, left hemisphere 176.8
2668 Female, age 75, unknown 173.9
1796 Male, age 53, unknown 165.1
1913 Female, age 42, unknown 161.9
1895 Male, age 76, right hemisphere 148.4
2087 Female, age 72, unknown 146.9
2261 Male, age 18, unknown 144.0
2664 Male, age 75, both hemispheres 141.6
1995 Male, age 72, unknown 140.1
1839 Male, age 51, unknown 125.4
Ventral tegmental area
nTPM: 161.5
2223 Female, age 72, unknown 184.1
2218 Male, age 76, both hemispheres 175.8
1915 Female, age 42, unknown 175.1
2410 Female, age 72, unknown 147.1
1942 Male, age 51, unknown 145.4
2021 Male, age 53, unknown 141.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 407.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 407.7
Samples: 139

Max nTPM: 939.8
Min nTPM: 230.4
Std nTPM: 93.0
Median nTPM: 396.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 939.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 718.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 661.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 615.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 599.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 592.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 574.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 568.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 551.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 551.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 548.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 310.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 310.6
FF:10158-103A5 76 years, female 310.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.5
Samples: 4

Max nTPM: 110.2
Min nTPM: 67.1
Sample A Female 110.2
Sample B Female 67.1
Sample C Male 98.8
Sample D Male 85.7
Midbrain
nTPM: 101.7
Samples: 4

Max nTPM: 165.4
Min nTPM: 72.1
Sample A Female 165.4
Sample B Female 80.5
Sample C Male 88.8
Sample D Male 72.1
Periaqueductal gray
nTPM: 73.1
Samples: 3

Max nTPM: 82.7
Min nTPM: 65.2
Sample B Female 65.2
Sample C Male 82.7
Sample D Male 71.3
Superior colliculi
nTPM: 97.3
Samples: 4

Max nTPM: 118.1
Min nTPM: 77.5
Sample A Female 118.1
Sample B Female 77.5
Sample C Male 98.8
Sample D Male 94.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.2
Samples: 4

Max nTPM: 138.2
Min nTPM: 104.3
Sample A Male 138.2
Sample B Male 104.3
Sample C Female 114.9
Sample D Female 135.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
68117986 Antisense, RP_040929_01_H04, Mouse strain C57BL/6J (56 days, male) 4.0

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