MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.7 nTPM
HPA Brain:82.3 nTPM
GTEx:136.7 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:161.3 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.9
2666 Male, age 74, left hemisphere 111.3
2586 Male, age 75, left hemisphere 97.8
2019 Male, age 18, unknown 89.2
2411 Female, age 72, unknown 81.6
1827 Male, age 72, unknown 69.0
1830 Male, age 51, unknown 65.8
1870 Female, age 42, unknown 63.9
2828 Female, age 72, unknown 63.9
1833 Male, age 53, unknown 63.3
2219 Male, age 76, both hemispheres 63.1
Dorsal raphe nucleus
nTPM: 66.3
1828 Male, age 53, unknown 74.1
2047 Male, age 72, unknown 67.3
2298 Female, age 72, unknown 66.5
2016 Female, age 72, unknown 62.0
2750 Male, age 76, both hemispheres 61.7
Inferior colliculus
nTPM: 59.5
1890 Male, age 53, unknown 72.3
2097 Female, age 72, unknown 62.9
1848 Female, age 42, unknown 53.0
2849 Male, age 72, unknown 49.7
Median raphe nucleus
nTPM: 65.5
2220 Male, age 76, midline 65.5
Periaquaductal grey, anterior
nTPM: 53.5
1947 Male, age 18, unknown 63.7
2502 Female, age 75, unknown 52.2
1795 Male, age 51, unknown 44.7
Periaquaductal grey, dorsal
nTPM: 45.9
1831 Male, age 72, unknown 56.2
2464 Female, age 72, unknown 51.7
1840 Male, age 53, unknown 39.6
2850 Male, age 76, both hemispheres 35.9
Periaquaductal grey, lateral
nTPM: 45.0
2053 Male, age 18, unknown 49.2
2272 Male, age 74, both hemispheres 44.6
2140 Male, age 76, both hemispheres 41.1
Pretectal area
nTPM: 59.8
2007 Male, age 72, unknown 80.4
1815 Male, age 53, unknown 77.5
1816 Male, age 51, unknown 74.3
1817 Female, age 42, unknown 73.2
1944 Female, age 72, unknown 67.9
2825 Male, age 18, unknown 53.1
2407 Male, age 75, both hemispheres 50.9
2667 Female, age 75, unknown 47.1
2224 Female, age 72, unknown 45.8
2316 Male, age 76, right hemisphere 44.2
2273 Male, age 74, both hemispheres 43.1
Red nucleus
nTPM: 82.3
2588 Male, age 74, left hemisphere 103.8
2725 Female, age 75, unknown 89.3
1821 Female, age 72, unknown 86.3
2503 Female, age 72, unknown 86.0
1954 Female, age 42, unknown 82.2
2584 Male, age 75, left hemisphere 81.6
1865 Male, age 51, unknown 78.0
2227 Male, age 72, unknown 77.5
2785 Male, age 18, unknown 77.2
2823 Male, age 76, right hemisphere 76.1
2769 Male, age 72, unknown 75.3
1904 Male, age 53, unknown 74.7
Substantia nigra
nTPM: 75.5
1851 Male, age 51, unknown 91.2
1916 Female, age 42, unknown 87.5
2665 Male, age 74, both hemispheres 83.0
1889 Female, age 72, unknown 82.0
2409 Female, age 72, unknown 79.3
2699 Male, age 18, unknown 67.9
2241 Male, age 72, unknown 67.8
1941 Male, age 53, unknown 66.9
2590 Female, age 75, unknown 65.8
2583 Male, age 75, right hemisphere 63.8
Superior colliculus
nTPM: 60.7
2668 Female, age 75, unknown 78.9
2087 Female, age 72, unknown 69.4
2587 Male, age 74, left hemisphere 60.9
1839 Male, age 51, unknown 60.6
1895 Male, age 76, right hemisphere 60.2
1913 Female, age 42, unknown 58.1
2664 Male, age 75, both hemispheres 56.8
1995 Male, age 72, unknown 56.6
1796 Male, age 53, unknown 55.8
2261 Male, age 18, unknown 49.6
Ventral tegmental area
nTPM: 65.4
1915 Female, age 42, unknown 83.3
2410 Female, age 72, unknown 68.6
2223 Female, age 72, unknown 66.4
2021 Male, age 53, unknown 63.3
1942 Male, age 51, unknown 58.9
2218 Male, age 76, both hemispheres 52.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 136.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 136.7
Samples: 139

Max nTPM: 328.6
Min nTPM: 63.3
Std nTPM: 39.2
Median nTPM: 129.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 328.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 275.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 236.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 223.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 206.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 205.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 203.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 203.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 200.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 198.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 195.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.4
FF:10158-103A5 76 years, female 64.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 35.3
Min nTPM: 23.4
Sample A Female 35.3
Sample B Female 27.1
Sample C Male 26.6
Sample D Male 23.4
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 41.6
Min nTPM: 23.4
Sample A Female 41.6
Sample B Female 27.8
Sample C Male 24.9
Sample D Male 23.4
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 25.2
Min nTPM: 22.4
Sample B Female 24.4
Sample C Male 25.2
Sample D Male 22.4
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 34.6
Min nTPM: 25.9
Sample A Female 34.6
Sample B Female 33.5
Sample C Male 27.7
Sample D Male 25.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 161.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.3
Samples: 4

Max nTPM: 169.2
Min nTPM: 158.0
Sample A Male 158.0
Sample B Male 158.5
Sample C Female 169.2
Sample D Female 159.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
75043147 Antisense, RP_060220_02_G08, Mouse strain C57BL/6J (56 days, male) 3.2
69134523 Antisense, RP_050321_03_A11, Mouse strain C57BL/6J (56 days, male) 0.9

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