BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:9.8 nTPM
GTEx:7.5 nTPM
FANTOM5:30.4 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:11.4 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020485
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.8
2481 Female, age 94, left hemisphere 13.3
2290 Female, age 72, unknown 10.9
2288 Male, age 75, left hemisphere 10.3
1857 Female, age 85, left hemisphere 9.8
2846 Female, age 79, unknown 8.8
1781 Male, age 74, unknown 8.7
1854 Male, age 80, left hemisphere 8.5
2289 Male, age 61, right hemisphere 7.8
Globus pallidus, externus
nTPM: 8.6
2772 Female, age 79, unknown 11.2
1996 Male, age 80, right hemisphere 9.5
2395 Male, age 75, both hemispheres 8.4
2646 Male, age 61, right hemisphere 7.0
2567 Female, age 72, unknown 6.9
Globus pallidus, internus
nTPM: 9.8
2287 Male, age 75, right hemisphere 13.6
2778 Female, age 91, both hemispheres 10.9
2111 Female, age 85, right hemisphere 10.3
1818 Male, age 74, unknown 10.0
2483 Female, age 94, right hemisphere 9.1
2037 Male, age 80, right hemisphere 7.9
2566 Female, age 72, unknown 7.1
Nucleus accumbens
nTPM: 9.8
2286 Male, age 75, left hemisphere 11.8
2698 Female, age 72, unknown 11.2
2391 Female, age 94, left hemisphere 10.6
2824 Male, age 61, right hemisphere 9.8
1856 Female, age 91, right hemisphere 9.6
1783 Male, age 74, unknown 8.8
1806 Female, age 85, left hemisphere 8.7
2732 Male, age 80, right hemisphere 7.8
Nucleus basalis of Meynert
nTPM: 8.1
2393 Male, age 80, right hemisphere 9.2
2821 Male, age 75, both hemispheres 8.9
2484 Female, age 94, left hemisphere 8.7
2569 Male, age 61, both hemispheres 5.6
Nucleus of the diagonal band
nTPM: 8.7
1812 Female, age 91, both hemispheres 10.0
2195 Female, age 85, both hemispheres 8.6
1979 Male, age 74, unknown 8.5
2775 Male, age 80, right hemisphere 8.4
2029 Male, age 61, right hemisphere 8.2
Putamen
nTPM: 8.7
2482 Female, age 94, left hemisphere 10.5
1838 Male, age 80, right hemisphere 9.4
1829 Male, age 74, unknown 8.7
1937 Female, age 91, right hemisphere 8.7
2466 Female, age 79, unknown 8.3
2647 Male, age 75, left hemisphere 8.3
2489 Female, age 72, unknown 7.4
Septal nuclei
nTPM: 8.6
1960 Male, age 74, unknown 10.3
2199 Male, age 80, right hemisphere 10.3
2629 Female, age 94, right hemisphere 9.6
2031 Female, age 72, unknown 9.2
2394 Male, age 61, left hemisphere 7.7
2009 Female, age 91, both hemispheres 7.5
2059 Female, age 85, both hemispheres 5.8
Stria terminalis, bed nucleus
nTPM: 8.2
2486 Female, age 94, both hemispheres 8.4
1974 Female, age 91, both hemispheres 8.2
2201 Male, age 74, unknown 8.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7.1
Samples: 246

Max nTPM: 14.0
Min nTPM: 2.7
Std nTPM: 2.0
Median nTPM: 6.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 14.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 14.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 13.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 13.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 12.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 12.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 12.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 12.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 11.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 11.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 11.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.5
Samples: 246

Max nTPM: 12.7
Min nTPM: 3.2
Std nTPM: 1.9
Median nTPM: 7.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 12.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 12.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 11.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 11.9
GTEX-12ZZY-0011-R6b-SM-5EGLA 60-69 years, male 11.6
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 11.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 11.3
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 11.1
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 11.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 11.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 10.8
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Brain - Putamen (basal ganglia)
Average nTPM: 6.9
Samples: 205

Max nTPM: 17.6
Min nTPM: 2.2
Std nTPM: 1.9
Median nTPM: 6.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 17.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 11.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 11.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 10.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 10.8
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 10.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 10.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 10.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 10.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 10.3
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 10.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.4
FF:10164-103B2 76 years, female 30.4
Nucleus accumbens
Scaled Tags Per Million: 29.8
FF:10037-101F1 23-56 years, mixed 29.8
Putamen
Scaled Tags Per Million: 29.1
FF:10176-103C5 60 years, female 29.1
Globus pallidus
Scaled Tags Per Million: 26.2
FF:10161-103A8 76 years, female 32.1
FF:10175-103C4 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.2
Samples: 4

Max nTPM: 5.2
Min nTPM: 3.2
Sample A Female 5.2
Sample B Female 3.2
Sample C Male 4.4
Sample D Male 4.0
Putamen
nTPM: 4.6
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.4
Sample A Female 4.7
Sample B Female 4.5
Sample C Male 5.8
Sample D Male 3.4
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.0
Sample A Female 5.8
Sample B Female 5.2
Sample C Male 4.9
Sample D Male 4.0
Ventral pallidum
nTPM: 4.5
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 5.3
Sample C Male 4.3
Sample D Male 4.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.6
Sample A Male 10.4
Sample B Male 12.3
Sample C Female 11.7
Sample D Female 8.6
Septum
nTPM: 11.4
Samples: 4

Max nTPM: 13.4
Min nTPM: 8.6
Sample A Male 8.6
Sample B Male 10.7
Sample C Female 13.4
Sample D Female 12.7
Ventral forebrain
nTPM: 11.3
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.7
Sample A Male 12.1
Sample B Male 11.4
Sample C Female 10.7
Sample D Female 10.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68744026 Antisense, RP_050203_02_A09, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.6
68744026 Antisense, RP_050203_02_A09, Mouse strain C57BL/6J (56 days, male) 0.6

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