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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
51.5
nTPM
Monaco:
18.8
nTPM
Schmiedel:
63.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
51.5
HPA sample
nTPM
gdT-cell nTPM: 35.8
Samples: 6
Max nTPM: 45.6
Min nTPM: 26.6
P10809_1007
26.6
P10809_1022
45.6
P10809_1041
36.9
P10809_1060
34.5
P10809_1077
41.7
P10809_1098
29.5
MAIT T-cell nTPM: 46.0
Samples: 6
Max nTPM: 63.9
Min nTPM: 23.1
P10809_1006
23.1
P10809_1024
63.9
P10809_1043
36.9
P10809_1062
54.9
P10809_1083
54.8
P10809_1097
42.1
Memory CD4 T-cell nTPM: 43.2
Samples: 6
Max nTPM: 56.9
Min nTPM: 30.5
P10809_1014
30.5
P10809_1026
56.9
P10809_1045
45.0
P10809_1064
41.8
P10809_1086
42.2
P10809_1113
42.6
Memory CD8 T-cell nTPM: 48.0
Samples: 5
Max nTPM: 63.1
Min nTPM: 31.9
P10809_1012
31.9
P10809_1027
63.1
P10809_1046
48.9
P10809_1065
45.2
P10809_1111
50.9
Naive CD4 T-cell nTPM: 43.3
Samples: 6
Max nTPM: 73.1
Min nTPM: 22.1
P10809_1015
22.1
P10809_1030
39.4
P10809_1049
73.1
P10809_1068
46.6
P10809_1085
45.9
P10809_1112
32.6
Naive CD8 T-cell nTPM: 41.6
Samples: 6
Max nTPM: 50.3
Min nTPM: 26.8
P10809_1016
26.8
P10809_1031
50.3
P10809_1050
46.8
P10809_1069
48.2
P10809_1087
43.4
P10809_1110
34.2
T-reg nTPM: 51.5
Samples: 6
Max nTPM: 71.1
Min nTPM: 40.1
P10809_1018
42.0
P10809_1037
41.0
P10809_1056
71.1
P10809_1075
69.3
P10809_1094
40.1
P10809_1106
45.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
18.8
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 10.7
Samples: 4
Max nTPM: 16.6
Min nTPM: 4.4
RHH5202_R3573
13.3
RHH5230_R3602
4.4
RHH5259_R3631
8.4
RHH5288_R3660
16.6
Effector memory CD8 T-cell nTPM: 9.0
Samples: 4
Max nTPM: 14.9
Min nTPM: 6.2
RHH5203_R3574
14.9
RHH5231_R3603
6.6
RHH5260_R3632
6.2
RHH5289_R3661
8.1
MAIT T-cell nTPM: 9.8
Samples: 4
Max nTPM: 14.3
Min nTPM: 5.0
RHH5233_R3605
13.5
RHH5205_R3576
5.0
RHH5262_R3634
6.5
RHH5297_R3663
14.3
Memory CD4 T-cell TFH nTPM: 16.5
Samples: 4
Max nTPM: 30.0
Min nTPM: 11.3
RHH5300_R3666
12.0
RHH5236_R3608
12.6
RHH5265_R3637
11.3
RHH5208_R3579
30.0
Memory CD4 T-cell Th1 nTPM: 10.2
Samples: 4
Max nTPM: 16.9
Min nTPM: 6.3
RHH5210_R3581
8.2
RHH5302_R3668
16.9
RHH5238_R3610
6.3
RHH5267_R3639
9.5
Memory CD4 T-cell Th1/Th17 nTPM: 8.3
Samples: 4
Max nTPM: 10.5
Min nTPM: 6.1
RHH5303_R3669
10.5
RHH5211_R3582
6.6
RHH5239_R3611
6.1
RHH5268_R3640
9.8
Memory CD4 T-cell Th17 nTPM: 12.6
Samples: 4
Max nTPM: 16.7
Min nTPM: 8.9
RHH5304_R3670
8.9
RHH5212_R3583
16.7
RHH5240_R3612
14.5
RHH5269_R3641
10.2
Memory CD4 T-cell Th2 nTPM: 10.3
Samples: 4
Max nTPM: 14.8
Min nTPM: 7.2
RHH5305_R3671
9.3
RHH5213_R3584
14.8
RHH5241_R3613
9.7
RHH5270_R3642
7.2
Naive CD4 T-cell nTPM: 18.8
Samples: 4
Max nTPM: 19.9
Min nTPM: 17.9
RHH5306_R3672
17.9
RHH5214_R3585
18.0
RHH5242_R3614
19.2
RHH5271_R3643
19.9
Naive CD8 T-cell nTPM: 14.7
Samples: 4
Max nTPM: 16.7
Min nTPM: 11.6
RHH5201_R3572
16.1
RHH5229_R3601
14.2
RHH5258_R3630
11.6
RHH5287_R3659
16.7
Non-Vd2 gdTCR nTPM: 9.2
Samples: 4
Max nTPM: 11.7
Min nTPM: 6.4
RHH5235_R3607
6.4
RHH5264_R3636
7.5
RHH5207_R3578
11.7
RHH5299_R3665
11.1
T-reg nTPM: 14.4
Samples: 4
Max nTPM: 19.3
Min nTPM: 9.7
RHH5301_R3667
19.3
RHH5237_R3609
18.6
RHH5266_R3638
9.7
RHH5209_R3580
9.9
Terminal effector memory CD4 T-cell nTPM: 6.9
Samples: 2
Max nTPM: 7.1
Min nTPM: 6.7
RHH5243_R3615
6.7
RHH5272_R3644
7.1
Terminal effector memory CD8 T-cell nTPM: 10.2
Samples: 4
Max nTPM: 13.6
Min nTPM: 6.3
RHH5232_R3604
7.8
RHH5204_R3575
13.0
RHH5261_R3633
6.3
RHH5296_R3662
13.6
Vd2 gdTCR nTPM: 10.7
Samples: 4
Max nTPM: 13.6
Min nTPM: 5.5
RHH5234_R3606
5.5
RHH5206_R3577
13.6
RHH5263_R3635
13.2
RHH5298_R3664
10.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
