MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.1 nTPM
HPA Brain:170.9 nTPM
GTEx:92.1 nTPM
FANTOM5:217.7 Scaled Tags Per Million
Pig:106.3 nTPM
Mouse:121.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 170.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.3
2019 Male, age 18, unknown 152.9
2586 Male, age 75, left hemisphere 149.1
1827 Male, age 72, unknown 132.7
2828 Female, age 72, unknown 130.0
1870 Female, age 42, unknown 125.7
1833 Male, age 53, unknown 117.3
1830 Male, age 51, unknown 115.9
2411 Female, age 72, unknown 113.6
2666 Male, age 74, left hemisphere 103.5
2219 Male, age 76, both hemispheres 102.1
Dorsal raphe nucleus
nTPM: 131.2
2298 Female, age 72, unknown 143.8
2750 Male, age 76, both hemispheres 135.3
1828 Male, age 53, unknown 130.8
2047 Male, age 72, unknown 123.1
2016 Female, age 72, unknown 122.9
Inferior colliculus
nTPM: 126.8
1890 Male, age 53, unknown 131.7
1848 Female, age 42, unknown 131.2
2097 Female, age 72, unknown 125.4
2849 Male, age 72, unknown 118.8
Median raphe nucleus
nTPM: 170.9
2220 Male, age 76, midline 170.9
Periaquaductal grey, anterior
nTPM: 153.2
2502 Female, age 75, unknown 172.2
1947 Male, age 18, unknown 144.1
1795 Male, age 51, unknown 143.1
Periaquaductal grey, dorsal
nTPM: 147.1
2850 Male, age 76, both hemispheres 203.9
1831 Male, age 72, unknown 137.4
1840 Male, age 53, unknown 128.9
2464 Female, age 72, unknown 118.0
Periaquaductal grey, lateral
nTPM: 164.2
2140 Male, age 76, both hemispheres 206.8
2272 Male, age 74, both hemispheres 159.6
2053 Male, age 18, unknown 126.3
Pretectal area
nTPM: 151.2
2273 Male, age 74, both hemispheres 177.6
1816 Male, age 51, unknown 170.3
2007 Male, age 72, unknown 167.9
1944 Female, age 72, unknown 162.2
1817 Female, age 42, unknown 157.4
1815 Male, age 53, unknown 153.7
2667 Female, age 75, unknown 153.5
2316 Male, age 76, right hemisphere 147.3
2224 Female, age 72, unknown 145.4
2825 Male, age 18, unknown 117.2
2407 Male, age 75, both hemispheres 110.7
Red nucleus
nTPM: 130.1
2785 Male, age 18, unknown 146.5
1821 Female, age 72, unknown 145.4
1954 Female, age 42, unknown 138.6
1904 Male, age 53, unknown 137.3
2725 Female, age 75, unknown 136.2
2503 Female, age 72, unknown 133.8
1865 Male, age 51, unknown 130.2
2227 Male, age 72, unknown 130.1
2769 Male, age 72, unknown 127.9
2823 Male, age 76, right hemisphere 122.8
2584 Male, age 75, left hemisphere 106.2
2588 Male, age 74, left hemisphere 105.7
Substantia nigra
nTPM: 154.2
1916 Female, age 42, unknown 211.1
1851 Male, age 51, unknown 170.6
2241 Male, age 72, unknown 159.7
2699 Male, age 18, unknown 158.6
1889 Female, age 72, unknown 157.3
1941 Male, age 53, unknown 154.3
2583 Male, age 75, right hemisphere 143.1
2409 Female, age 72, unknown 141.6
2590 Female, age 75, unknown 127.1
2665 Male, age 74, both hemispheres 119.0
Superior colliculus
nTPM: 133.9
1796 Male, age 53, unknown 157.4
2261 Male, age 18, unknown 157.3
2087 Female, age 72, unknown 142.9
2664 Male, age 75, both hemispheres 138.6
2668 Female, age 75, unknown 131.3
1913 Female, age 42, unknown 128.4
1995 Male, age 72, unknown 125.7
1839 Male, age 51, unknown 121.6
2587 Male, age 74, left hemisphere 119.0
1895 Male, age 76, right hemisphere 117.2
Ventral tegmental area
nTPM: 137.4
1915 Female, age 42, unknown 150.2
2410 Female, age 72, unknown 147.6
2218 Male, age 76, both hemispheres 140.9
2223 Female, age 72, unknown 134.3
1942 Male, age 51, unknown 132.9
2021 Male, age 53, unknown 118.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 92.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.1
Samples: 139

Max nTPM: 175.4
Min nTPM: 52.7
Std nTPM: 22.7
Median nTPM: 89.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 175.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 153.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 152.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 149.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 148.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 146.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 142.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 136.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 135.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 129.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 127.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 217.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 217.7
FF:10158-103A5 76 years, female 217.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 106.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 83.5
Samples: 4

Max nTPM: 100.3
Min nTPM: 73.4
Sample A Female 100.3
Sample B Female 79.2
Sample C Male 81.2
Sample D Male 73.4
Midbrain
nTPM: 102.5
Samples: 4

Max nTPM: 128.6
Min nTPM: 88.2
Sample A Female 104.7
Sample B Female 88.2
Sample C Male 128.6
Sample D Male 88.3
Periaqueductal gray
nTPM: 86.9
Samples: 3

Max nTPM: 96.6
Min nTPM: 72.3
Sample B Female 91.8
Sample C Male 96.6
Sample D Male 72.3
Superior colliculi
nTPM: 106.3
Samples: 4

Max nTPM: 126.3
Min nTPM: 89.4
Sample A Female 109.5
Sample B Female 89.4
Sample C Male 126.3
Sample D Male 99.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.2
Samples: 4

Max nTPM: 125.8
Min nTPM: 117.2
Sample A Male 117.2
Sample B Male 123.0
Sample C Female 125.8
Sample D Female 118.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1138 Antisense, RP_Baylor_103133, Mouse strain C57BL/6J (56 days, male) 0.1
1140 Antisense, RP_Baylor_103133, Mouse strain C57BL/6J (56 days, male) 0.0

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