MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.3 nTPM
HPA Brain:46.3 nTPM
GTEx:17.3 nTPM
FANTOM5:48.3 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:72.7 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2411 Female, age 72, unknown 49.3
1870 Female, age 42, unknown 47.0
1833 Male, age 53, unknown 46.3
1830 Male, age 51, unknown 46.1
2019 Male, age 18, unknown 44.5
2666 Male, age 74, left hemisphere 43.4
1827 Male, age 72, unknown 38.8
2828 Female, age 72, unknown 37.2
2586 Male, age 75, left hemisphere 34.1
2219 Male, age 76, both hemispheres 29.8
Dorsal raphe nucleus
nTPM: 32.2
2750 Male, age 76, both hemispheres 42.7
2016 Female, age 72, unknown 32.4
1828 Male, age 53, unknown 30.7
2047 Male, age 72, unknown 28.9
2298 Female, age 72, unknown 26.6
Inferior colliculus
nTPM: 37.2
1848 Female, age 42, unknown 38.9
2097 Female, age 72, unknown 37.3
2849 Male, age 72, unknown 36.7
1890 Male, age 53, unknown 35.9
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Periaquaductal grey, anterior
nTPM: 38.3
1947 Male, age 18, unknown 43.6
2502 Female, age 75, unknown 39.1
1795 Male, age 51, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 29.5
2464 Female, age 72, unknown 39.2
1840 Male, age 53, unknown 30.0
1831 Male, age 72, unknown 25.2
2850 Male, age 76, both hemispheres 23.4
Periaquaductal grey, lateral
nTPM: 28.2
2272 Male, age 74, both hemispheres 32.4
2053 Male, age 18, unknown 31.0
2140 Male, age 76, both hemispheres 21.4
Pretectal area
nTPM: 32.0
2316 Male, age 76, right hemisphere 37.5
1815 Male, age 53, unknown 35.9
1817 Female, age 42, unknown 35.7
2825 Male, age 18, unknown 35.7
2007 Male, age 72, unknown 33.9
2407 Male, age 75, both hemispheres 33.9
2224 Female, age 72, unknown 30.8
2273 Male, age 74, both hemispheres 28.6
1816 Male, age 51, unknown 28.3
1944 Female, age 72, unknown 26.5
2667 Female, age 75, unknown 25.4
Red nucleus
nTPM: 46.3
1865 Male, age 51, unknown 50.4
1904 Male, age 53, unknown 50.3
2503 Female, age 72, unknown 49.9
1821 Female, age 72, unknown 49.4
1954 Female, age 42, unknown 47.5
2227 Male, age 72, unknown 47.1
2769 Male, age 72, unknown 45.6
2725 Female, age 75, unknown 44.9
2588 Male, age 74, left hemisphere 44.4
2823 Male, age 76, right hemisphere 43.3
2785 Male, age 18, unknown 42.9
2584 Male, age 75, left hemisphere 39.5
Substantia nigra
nTPM: 32.5
2583 Male, age 75, right hemisphere 39.3
2409 Female, age 72, unknown 39.1
2241 Male, age 72, unknown 37.6
1889 Female, age 72, unknown 35.0
1851 Male, age 51, unknown 34.1
2590 Female, age 75, unknown 31.0
2665 Male, age 74, both hemispheres 29.5
1941 Male, age 53, unknown 28.5
1916 Female, age 42, unknown 25.8
2699 Male, age 18, unknown 25.7
Superior colliculus
nTPM: 39.1
2668 Female, age 75, unknown 49.8
1895 Male, age 76, right hemisphere 47.9
1913 Female, age 42, unknown 42.9
1995 Male, age 72, unknown 41.8
2587 Male, age 74, left hemisphere 40.5
1839 Male, age 51, unknown 39.0
1796 Male, age 53, unknown 37.7
2261 Male, age 18, unknown 33.5
2664 Male, age 75, both hemispheres 32.0
2087 Female, age 72, unknown 26.4
Ventral tegmental area
nTPM: 35.7
2223 Female, age 72, unknown 48.4
2410 Female, age 72, unknown 37.3
1942 Male, age 51, unknown 35.6
1915 Female, age 42, unknown 31.6
2218 Male, age 76, both hemispheres 30.8
2021 Male, age 53, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.3
Samples: 139

Max nTPM: 37.9
Min nTPM: 6.9
Std nTPM: 6.1
Median nTPM: 15.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 37.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 36.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 35.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 32.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 31.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 30.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 28.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.3
FF:10158-103A5 76 years, female 48.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.8
Samples: 4

Max nTPM: 51.9
Min nTPM: 29.8
Sample A Female 38.7
Sample B Female 29.8
Sample C Male 38.8
Sample D Male 51.9
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 47.8
Min nTPM: 32.8
Sample A Female 46.1
Sample B Female 47.8
Sample C Male 32.8
Sample D Male 44.4
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 43.3
Min nTPM: 30.6
Sample B Female 43.3
Sample C Male 30.6
Sample D Male 33.4
Superior colliculi
nTPM: 37.6
Samples: 4

Max nTPM: 42.6
Min nTPM: 23.8
Sample A Female 42.0
Sample B Female 23.8
Sample C Male 42.6
Sample D Male 42.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.7
Samples: 4

Max nTPM: 82.4
Min nTPM: 65.7
Sample A Male 65.7
Sample B Male 67.1
Sample C Female 82.4
Sample D Female 75.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
583860 Antisense, RP_040831_01_B11, Mouse strain C57BL/6J (56 days, male) 0.8

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