HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:22.1 nTPM
HPA Brain:69.4 nTPM
GTEx:22.1 nTPM
FANTOM5:42.5 Scaled Tags Per Million
Pig:40.4 nTPM
Mouse:71.4 nTPM
Allen mouse:1.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA002043
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 69.4
Sample id Sample description nTPM
Hippocampus
nTPM: 32.6
1898 Male, age 80, left hemisphere 38.2
1911 Female, age 85, right hemisphere 37.1
2148 Female, age 91, left hemisphere 31.5
2621 Female, age 67, right hemisphere 30.4
2529 Female, age 94, left hemisphere 30.0
1855 Male, age 76, left hemisphere 28.3
Dentate gyrus
nTPM: 33.5
1927 Female, age 91, both hemispheres 38.6
2530 Female, age 94, left hemisphere 35.5
2010 Male, age 76, both hemispheres 34.0
2531 Female, age 67, both hemispheres 33.8
2246 Female, age 85, both hemispheres 33.4
2528 Male, age 74, both hemispheres 25.6
Entorhinal gyrus
nTPM: 60.6
2764 Male, age 80, right hemisphere 74.0
2613 Female, age 94, left hemisphere 66.0
1938 Female, age 85, left hemisphere 59.3
1787 Male, age 76, left hemisphere 58.8
2686 Male, age 75, right hemisphere 55.8
2117 Female, age 91, right hemisphere 49.7
Hippocampus, CA1
nTPM: 33.9
2749 Male, age 80, left hemisphere 37.6
2045 Male, age 76, both hemispheres 36.7
2082 Female, age 91, right hemisphere 34.4
1873 Female, age 85, both hemispheres 31.2
2527 Male, age 74, both hemispheres 29.7
Hippocampus, CA2
nTPM: 39.9
1892 Male, age 76, both hemispheres 45.0
2437 Female, age 94, left hemisphere 44.2
1940 Female, age 85, left hemisphere 43.7
2113 Female, age 91, right hemisphere 41.2
2249 Male, age 74, both hemispheres 34.5
1963 Male, age 80, left hemisphere 30.6
Hippocampus, CA3
nTPM: 37.8
1867 Male, age 76, both hemispheres 50.8
1891 Female, age 85, both hemispheres 46.8
2137 Male, age 80, left hemisphere 39.5
2620 Female, age 94, left hemisphere 36.7
2436 Male, age 74, both hemispheres 28.0
2861 Female, age 67, both hemispheres 24.8
Parahippocampal cortex
nTPM: 56.9
1850 Male, age 80, both hemispheres 87.9
1990 Female, age 91, right hemisphere 70.3
2693 Female, age 94, both hemispheres 62.7
2532 Female, age 72, left hemisphere 60.8
1933 Female, age 85, both hemispheres 59.4
2018 Male, age 76, both hemispheres 49.2
2245 Female, age 91, both hemispheres 47.3
2692 Male, age 74, both hemispheres 44.4
2622 Female, age 67, right hemisphere 43.8
2250 Female, age 67, right hemisphere 42.9
Perirhinal gyrus
nTPM: 69.4
1794 Male, age 80, right hemisphere 79.5
2848 Male, age 76, right hemisphere 73.7
1841 Female, age 85, right hemisphere 72.4
1847 Female, age 91, left hemisphere 64.7
2521 Female, age 94, right hemisphere 56.6
Subiculum
nTPM: 44.4
1977 Female, age 85, both hemispheres 59.6
1901 Male, age 80, both hemispheres 51.6
2042 Male, age 76, both hemispheres 49.3
2438 Female, age 94, left hemisphere 44.8
2619 Male, age 74, both hemispheres 32.6
2729 Female, age 91, right hemisphere 28.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 22.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 22.1
Samples: 197

Max nTPM: 52.6
Min nTPM: 8.2
Std nTPM: 7.9
Median nTPM: 20.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 52.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 51.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 49.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 47.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 44.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 39.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 39.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 37.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 37.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 36.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 35.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.5
FF:10169-103B7 60 years, female 50.8
FF:10153-102I9 76 years, female 34.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.4
Pig sample Sample description nTPM
Subiculum
nTPM: 23.1
Samples: 4

Max nTPM: 23.5
Min nTPM: 22.8
Sample A Female 23.5
Sample B Female 23.2
Sample C Male 22.8
Sample D Male 23.0
Dorsal hippocampus
nTPM: 40.4
Samples: 4

Max nTPM: 47.7
Min nTPM: 36.7
Sample A Female 47.7
Sample B Female 37.2
Sample C Male 36.7
Sample D Male 40.0
Entorhinal cortex
nTPM: 23.5
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 26.7
Sample C Male 20.5
Sample D Male 26.6
Ventral hippocampus
nTPM: 28.7
Samples: 4

Max nTPM: 36.2
Min nTPM: 23.8
Sample A Female 30.2
Sample B Female 24.6
Sample C Male 23.8
Sample D Male 36.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 71.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.9
Samples: 4

Max nTPM: 57.7
Min nTPM: 42.2
Sample A Male 57.7
Sample B Male 51.8
Sample C Female 51.8
Sample D Female 42.2
Hippocampal formation
nTPM: 71.4
Samples: 4

Max nTPM: 89.5
Min nTPM: 59.2
Sample A Male 59.2
Sample B Male 70.2
Sample C Female 89.5
Sample D Female 66.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.8
583860 Antisense, RP_040831_01_B11, Mouse strain C57BL/6J (56 days, male) 1.8

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