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                                  BRAIN MEDULLA OBLONGATA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  VALIDATION
                                  Brain proteome
                                  Medulla oblongata
                                  MEDULLA OBLONGATA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:72.7 nTPM
                                  FANTOM5:49.1 Scaled Tags Per Million
                                  Pig:37.5 nTPM
                                  Allen mouse:1.7 Expression energy

                                  MEDULLA OBLONGATA - HPA Brain RNA-seq
                                  Max nTPM 72.7
                                  Sample id Sample description nTPM
                                  Area postrema
                                  nTPM: 53.2
                                  2306 Male, age 80, both hemispheres 62.8
                                  2799 Male, age 61, both hemispheres 57.9
                                  2054 Male, age 76, both hemispheres 39.0
                                  Dorsal medullary reticular nucleus
                                  nTPM: 46.6
                                  2373 Male, age 61, both hemispheres 54.4
                                  2088 Male, age 76, both hemispheres 44.7
                                  2040 Female, age 85, both hemispheres 40.7
                                  Dorsal motor vagal complex
                                  nTPM: 37.7
                                  2185 Male, age 76, both hemispheres 64.8
                                  2643 Male, age 74, both hemispheres 42.2
                                  2807 Female, age 85, both hemispheres 38.7
                                  2797 Male, age 61, both hemispheres 38.6
                                  2000 Male, age 74, unknown 34.7
                                  2133 Female, age 91, both hemispheres 29.3
                                  2844 Male, age 55, unknown 29.0
                                  2813 Female, age 72, unknown 24.4
                                  Gigantocellular reticular nuclei, medullary
                                  nTPM: 52.7
                                  2314 Male, age 61, both hemispheres 83.6
                                  2387 Female, age 91, both hemispheres 53.5
                                  2310 Male, age 80, both hemispheres 50.0
                                  2022 Male, age 76, right hemisphere 44.7
                                  2462 Male, age 74, both hemispheres 43.4
                                  1876 Female, age 85, both hemispheres 40.8
                                  Gigantocellular reticular nuclei, pars
                                  nTPM: 50.8
                                  2336 Male, age 61, both hemispheres 69.1
                                  2330 Male, age 80, both hemispheres 54.8
                                  2706 Male, age 80, both hemispheres 52.0
                                  2168 Male, age 76, both hemispheres 42.4
                                  2084 Female, age 85, both hemispheres 35.8
                                  Inferior olive
                                  nTPM: 61.8
                                  2085 Female, age 85, both hemispheres 81.0
                                  2178 Male, age 61, both hemispheres 71.8
                                  2379 Male, age 80, both hemispheres 60.5
                                  2628 Female, age 91, both hemispheres 53.7
                                  2563 Male, age 74, both hemispheres 42.3
                                  Lateral medullary reticular nucleus
                                  nTPM: 56.5
                                  2374 Male, age 61, both hemispheres 71.7
                                  2190 Female, age 85, both hemispheres 64.2
                                  2852 Male, age 80, both hemispheres 60.9
                                  2804 Female, age 91, both hemispheres 49.9
                                  2305 Male, age 74, both hemispheres 47.4
                                  2044 Male, age 76, both hemispheres 44.9
                                  Medial olivary nucleus
                                  nTPM: 53.5
                                  1943 Male, age 61, both hemispheres 62.0
                                  2851 Male, age 80, both hemispheres 54.1
                                  2138 Female, age 91, both hemispheres 49.3
                                  1962 Male, age 76, both hemispheres 48.6
                                  Medial vestibular nucleus
                                  nTPM: 38.4
                                  2624 Male, age 61, both hemispheres 49.6
                                  2803 Female, age 91, both hemispheres 43.7
                                  2093 Male, age 80, both hemispheres 43.1
                                  2801 Male, age 74, both hemispheres 37.3
                                  2743 Female, age 85, both hemispheres 29.2
                                  2134 Male, age 76, both hemispheres 27.7
                                  Motor hypoglossal nucleus
                                  nTPM: 39.2
                                  2182 Male, age 80, both hemispheres 52.5
                                  2125 Female, age 91, both hemispheres 43.9
                                  2132 Female, age 85, both hemispheres 41.9
                                  2277 Male, age 76, both hemispheres 30.0
                                  2461 Male, age 61, both hemispheres 27.7
                                  Nucleus ambiguus
                                  nTPM: 56.0
                                  2071 Male, age 76, both hemispheres 61.7
                                  2096 Female, age 85, both hemispheres 50.3
                                  Nucleus cuneatus
                                  nTPM: 49.1
                                  2100 Male, age 76, both hemispheres 58.5
                                  2380 Male, age 80, both hemispheres 57.5
                                  2376 Male, age 61, both hemispheres 56.6
                                  2808 Female, age 85, both hemispheres 49.3
                                  2805 Female, age 91, both hemispheres 47.5
                                  2381 Male, age 80, both hemispheres 46.8
                                  2131 Male, age 76, both hemispheres 45.0
                                  2564 Male, age 74, both hemispheres 44.1
                                  2562 Male, age 61, both hemispheres 36.5
                                  Nucleus gracilis
                                  nTPM: 54.8
                                  2382 Male, age 80, both hemispheres 61.7
                                  2299 Female, age 85, both hemispheres 58.2
                                  2627 Male, age 74, both hemispheres 44.4
                                  Nucleus raphe obscurus
                                  nTPM: 72.7
                                  2800 Male, age 61, midline 90.4
                                  2845 Female, age 85, midline 68.4
                                  2142 Male, age 76, midline 59.4
                                  Nucleus raphe pallidus
                                  nTPM: 47.9
                                  2145 Male, age 76, midline 51.6
                                  1924 Male, age 61, midline 48.6
                                  2183 Male, age 80, midline 43.3
                                  Nucleus tractus solitarii
                                  nTPM: 26.4
                                  2307 Male, age 80, both hemispheres 32.9
                                  2656 Male, age 76, both hemispheres 29.4
                                  2191 Female, age 85, both hemispheres 26.4
                                  2144 Female, age 91, right hemisphere 16.6
                                  Parvicellular reticular nuclei
                                  nTPM: 47.3
                                  2558 Male, age 74, both hemispheres 50.9
                                  2095 Male, age 76, both hemispheres 45.7
                                  2119 Male, age 80, both hemispheres 45.4
                                  Parvicellular reticular nuclei, medullary
                                  nTPM: 37.4
                                  2189 Female, age 91, both hemispheres 39.9
                                  2091 Female, age 85, both hemispheres 36.5
                                  2181 Male, age 80, left hemisphere 35.9
                                  Peritrigeminal nucleus
                                  nTPM: 42.2
                                  2136 Male, age 76, both hemispheres 45.9
                                  2179 Male, age 61, both hemispheres 43.7
                                  2067 Female, age 85, both hemispheres 37.0
                                  Prepositus hypoglossal nucleus
                                  nTPM: 35.4
                                  2855 Female, age 85, right hemisphere 35.5
                                  2086 Male, age 80, both hemispheres 35.3
                                  Spinal trigeminal nucleus, caudal
                                  nTPM: 43.7
                                  2312 Male, age 61, both hemispheres 54.0
                                  2308 Male, age 80, both hemispheres 46.8
                                  2447 Male, age 76, both hemispheres 43.5
                                  2390 Female, age 91, both hemispheres 38.1
                                  2642 Male, age 74, both hemispheres 36.0
                                  Spinal trigeminal nucleus, interpolar
                                  nTPM: 35.4
                                  2389 Female, age 91, both hemispheres 43.3
                                  2033 Male, age 80, both hemispheres 37.3
                                  2066 Male, age 76, right hemisphere 32.6
                                  2625 Male, age 61, both hemispheres 31.9
                                  2386 Female, age 85, both hemispheres 31.7
                                  Spinal vestibular nucleus
                                  nTPM: 43.9
                                  2748 Male, age 76, both hemispheres 51.7
                                  2384 Male, age 74, both hemispheres 49.5
                                  2186 Female, age 91, both hemispheres 41.7
                                  2796 Male, age 61, both hemispheres 41.2
                                  2780 Male, age 80, both hemispheres 39.9
                                  2806 Female, age 85, both hemispheres 39.2
                                  Superior vestibular nucleus
                                  nTPM: 35.3
                                  2061 Male, age 76, both hemispheres 39.9
                                  2015 Male, age 80, both hemispheres 38.0
                                  2383 Male, age 74, both hemispheres 27.9
                                  Ventral medullary reticular nucleus
                                  nTPM: 62.9
                                  2372 Male, age 61, both hemispheres 78.0
                                  2060 Male, age 76, both hemispheres 47.7
                                  Ventrolateral medulla, A1-C1 cell groups
                                  nTPM: 51.2
                                  2118 Male, age 80, both hemispheres 64.7
                                  2180 Male, age 61, both hemispheres 63.4
                                  2302 Female, age 91, both hemispheres 48.6
                                  1986 Male, age 76, both hemispheres 44.6
                                  2741 Female, age 85, both hemispheres 34.8

                                  MEDULLA OBLONGATA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 49.1
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Medulla oblongata
                                  Scaled Tags Per Million: 49.1
                                  FF:10038-101F2 18-64 years, mixed 58.1
                                  FF:10155-103A2 76 years, female 53.3
                                  FF:10174-103C3 60 years, female 35.9

                                  MEDULLA OBLONGATA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 37.5
                                  Pig sample Sample description nTPM
                                  35.838.340.032.341.30510152025303540
                                  35.838.340.032.341.30510152025303540
                                  Medulla oblongata
                                  nTPM: 37.5
                                  Samples: 4

                                  Max nTPM: 41.3
                                  Min nTPM: 32.3
                                  Sample A Female 41.3
                                  Sample B Female 32.3
                                  Sample C Male 39.5
                                  Sample D Male 37.0

                                  MEDULLA OBLONGATA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 1.7
                                  Allen experiment id Experiment description Expression energy
                                  Medulla oblongata
                                  Expression energy: 1.7
                                  71656860 Antisense, RP_050927_04_D10, Mouse strain C57BL/6J (56 days, male) 1.7
                                  74274687 Antisense, RP_050927_04_D10, Mouse strain C57BL/6J (56 days, male) 1.4

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